{"id":"https://openalex.org/W2125117006","doi":"https://doi.org/10.1136/amiajnl-2013-002544","title":"Evaluating the state of the art in disorder recognition and normalization of the clinical narrative","display_name":"Evaluating the state of the art in disorder recognition and normalization of the clinical narrative","publication_year":2014,"publication_date":"2014-08-21","ids":{"openalex":"https://openalex.org/W2125117006","doi":"https://doi.org/10.1136/amiajnl-2013-002544","mag":"2125117006","pmid":"https://pubmed.ncbi.nlm.nih.gov/25147248"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-002544","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002544","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/143/34145292/amiajnl-2013-002544.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/22/1/143/34145292/amiajnl-2013-002544.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110598639","display_name":"Sameer Pradhan","orcid":null},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sameer Pradhan","raw_affiliation_strings":["Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047270546","display_name":"No\u00e9mie Elhadad","orcid":"https://orcid.org/0000-0001-9721-5240"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"No\u00e9mie Elhadad","raw_affiliation_strings":["Columbia University, New York, New York, USA","Columbia University , New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Columbia University , New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008552631","display_name":"Brett R. South","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brett R South","raw_affiliation_strings":["University of Utah, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071033512","display_name":"David Mart\u00ednez","orcid":"https://orcid.org/0000-0002-8969-9318"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"David Martinez","raw_affiliation_strings":["The University of Melbourne, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068888219","display_name":"Lee M. Christensen","orcid":"https://orcid.org/0000-0002-1161-9285"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee Christensen","raw_affiliation_strings":["University of Utah, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059326255","display_name":"Amy Vogel","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy Vogel","raw_affiliation_strings":["Columbia University, New York, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Columbia University, New York, New York, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059778915","display_name":"Hanna Suominen","orcid":"https://orcid.org/0000-0002-4195-1641"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]},{"id":"https://openalex.org/I188329596","display_name":"University of Canberra","ror":"https://ror.org/04s1nv328","country_code":"AU","type":"education","lineage":["https://openalex.org/I188329596"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4387155473","display_name":"ACT Government","ror":"https://ror.org/03fy7b149","country_code":null,"type":"government","lineage":["https://openalex.org/I4387155473"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Hanna Suominen","raw_affiliation_strings":["NICTA, The Australian National University, and University of Canberra, Canberra, Australian Capital Territory, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NICTA, The Australian National University, and University of Canberra, Canberra, Australian Capital Territory, Australia","institution_ids":["https://openalex.org/I118347636","https://openalex.org/I42894916","https://openalex.org/I188329596","https://openalex.org/I4387155473"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065170642","display_name":"Wendy W. Chapman","orcid":"https://orcid.org/0000-0001-8702-4483"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wendy W Chapman","raw_affiliation_strings":["University of Utah, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087865794","display_name":"Guergana Savova","orcid":"https://orcid.org/0000-0002-5887-200X"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guergana Savova","raw_affiliation_strings":["Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston Children's Hospital and Harvard Medical School, Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5110598639"],"corresponding_institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":8.0965,"has_fulltext":true,"cited_by_count":147,"citation_normalized_percentile":{"value":0.98316037,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"143","last_page":"154"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5957000255584717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5957000255584717,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.12870000302791595,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.09480000287294388,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/clef","display_name":"Clef","score":0.833163857460022},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7835758924484253},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6481825709342957},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6410667300224304},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.5870271921157837},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5821934342384338},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5248786807060242},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4964638352394104},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.453841894865036},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41759711503982544},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35239070653915405},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10272461175918579}],"concepts":[{"id":"https://openalex.org/C107763842","wikidata":"https://www.wikidata.org/wiki/Q181040","display_name":"Clef","level":3,"score":0.833163857460022},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7835758924484253},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6481825709342957},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6410667300224304},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.5870271921157837},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5821934342384338},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5248786807060242},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4964638352394104},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.453841894865036},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41759711503982544},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35239070653915405},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10272461175918579},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1136/amiajnl-2013-002544","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002544","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/143/34145292/amiajnl-2013-002544.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:25147248","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25147248","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/54831","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/54831","pdf_url":"http://hdl.handle.net/11343/54831","source":{"id":"https://openalex.org/S4306402500","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:dash.harvard.edu:1/24983942","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:24983942","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3670604","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4433360","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/68914","is_oa":false,"landing_page_url":"http://hdl.handle.net/1885/68914","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":"Journal article"},{"id":"pmh:tle:0926f8ac-3dab-4405-a943-35956dcd96ae:1f071524-0ffb-45dd-b0fd-e2ac8222ffc2:1","is_oa":true,"landing_page_url":"http://www.canberra.edu.au/researchrepository/items/0926f8ac-3dab-4405-a943-35956dcd96ae/1/","pdf_url":null,"source":{"id":"https://openalex.org/S7407050591","display_name":"University of Canberra Research Portal","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-002544","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002544","pdf_url":"https://academic.oup.com/jamia/article-pdf/22/1/143/34145292/amiajnl-2013-002544.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7200000286102295,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1449305495","display_name":null,"funder_award_id":"T15 LM007059","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G1658492139","display_name":null,"funder_award_id":"UL1 TR000002","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G2432602363","display_name":null,"funder_award_id":"5R01GM090187","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3840066543","display_name":null,"funder_award_id":"5T15LM007059","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4891255682","display_name":null,"funder_award_id":"R01 LM010090","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5138911815","display_name":null,"funder_award_id":"R01 GM090187","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6620910830","display_name":null,"funder_award_id":"R01LM10090","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7254630542","display_name":null,"funder_award_id":"R01LM10090","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2125117006.pdf"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W39864132","https://openalex.org/W156393264","https://openalex.org/W1516041857","https://openalex.org/W1530032857","https://openalex.org/W1550258693","https://openalex.org/W1573258796","https://openalex.org/W1637593105","https://openalex.org/W1676820704","https://openalex.org/W1830850936","https://openalex.org/W1971220772","https://openalex.org/W2002514548","https://openalex.org/W2057399676","https://openalex.org/W2059880962","https://openalex.org/W2076437101","https://openalex.org/W2096252540","https://openalex.org/W2103076621","https://openalex.org/W2115259143","https://openalex.org/W2121227244","https://openalex.org/W2121399461","https://openalex.org/W2121920862","https://openalex.org/W2122402213","https://openalex.org/W2134498732","https://openalex.org/W2141475634","https://openalex.org/W2142016317","https://openalex.org/W2142071150","https://openalex.org/W2146089916","https://openalex.org/W2164205487","https://openalex.org/W2168041406","https://openalex.org/W2170694982","https://openalex.org/W2178441628","https://openalex.org/W2186301176","https://openalex.org/W2250406924","https://openalex.org/W2285122704","https://openalex.org/W2293452551","https://openalex.org/W2295429526","https://openalex.org/W2296395374","https://openalex.org/W2396918234","https://openalex.org/W2401771481","https://openalex.org/W2404899636","https://openalex.org/W2405473321","https://openalex.org/W2487740732","https://openalex.org/W2602024037","https://openalex.org/W2606932501","https://openalex.org/W2781804600","https://openalex.org/W2803335141","https://openalex.org/W2913886681","https://openalex.org/W2915128229","https://openalex.org/W2916047559","https://openalex.org/W2963344632","https://openalex.org/W4299909075","https://openalex.org/W6601646523","https://openalex.org/W6606294442","https://openalex.org/W6632766574","https://openalex.org/W6636672007","https://openalex.org/W6664744150","https://openalex.org/W6675366379","https://openalex.org/W6678277124","https://openalex.org/W6684853950","https://openalex.org/W6688799412","https://openalex.org/W6691640304","https://openalex.org/W6696864393","https://openalex.org/W6697405796","https://openalex.org/W6697736604","https://openalex.org/W6712502259","https://openalex.org/W6713050519","https://openalex.org/W6713271019","https://openalex.org/W6714160674","https://openalex.org/W6752050541","https://openalex.org/W6759052712","https://openalex.org/W6759831810"],"related_works":["https://openalex.org/W1839123017","https://openalex.org/W4232115401","https://openalex.org/W1592594506","https://openalex.org/W2970828463","https://openalex.org/W3138512925","https://openalex.org/W117735687","https://openalex.org/W2917705549","https://openalex.org/W2296679031","https://openalex.org/W2292990913","https://openalex.org/W2793132289"],"abstract_inverted_index":{"OBJECTIVE:":[0],"The":[1,134,209,221],"ShARe/CLEF":[2],"eHealth":[3],"2013":[4],"Evaluation":[5],"Lab":[6],"Task":[7,56,66,151,167],"1":[8],"was":[9],"organized":[10],"to":[11,42,125,128,145,226],"evaluate":[12],"the":[13,16,19,72,90,116,119,153,181,201,227],"state":[14],"of":[15,61,71,77,89,96,160,176,180,211,219],"art":[17],"on":[18,28,138],"clinical":[20,98,100],"text":[21],"in":[22,112],"(i)":[23],"disorder":[24,39,132,212],"mention":[25,40],"identification/recognition":[26],"based":[27],"Unified":[29],"Medical":[30],"Language":[31],"System":[32],"(UMLS)":[33],"definition":[34],"(Task":[35,45],"1a)":[36],"and":[37,65,79,104,130,197,204],"(ii)":[38],"normalization":[41,213],"an":[43,157,174],"ontology":[44],"1b).":[46],"Such":[47],"a":[48,59,75,87,139,185,230],"community":[49,117,228],"evaluation":[50],"has":[51],"not":[52],"been":[53],"previously":[54],"executed.":[55],"1a":[57],"included":[58,68],"total":[60],"22":[62],"system":[63,155,170],"submissions,":[64],"1b":[67],"17.":[69],"Most":[70,179],"systems":[73,127,135,183],"employed":[74],"combination":[76],"rules":[78,196],"machine":[80],"learners.":[81],"MATERIALS":[82],"AND":[83],"METHODS:":[84],"We":[85,114],"used":[86,184],"subset":[88],"Shared":[91],"Annotated":[92],"Resources":[93],"(ShARe)":[94],"corpus":[95,223],"annotated":[97,120],"text--199":[99],"notes":[101],"for":[102,106,233],"training":[103,123,202],"99":[105],"testing":[107],"(roughly":[108],"180":[109],"K":[110],"words":[111],"total).":[113],"provided":[115],"with":[118,173,192],"gold":[121,141],"standard":[122,142,232],"documents":[124],"build":[126],"identify":[129],"normalize":[131],"mentions.":[133],"were":[136],"tested":[137],"held-out":[140],"test":[143],"set":[144],"measure":[146],"their":[147],"performance.":[148],"RESULTS:":[149],"For":[150,166],"1a,":[152],"best-performing":[154],"achieved":[156],"F1":[158],"score":[159],"0.75":[161],"(0.80":[162],"precision;":[163],"0.71":[164],"recall).":[165],"1b,":[168],"another":[169],"performed":[171],"best":[172],"accuracy":[175],"0.59.":[177],"DISCUSSION:":[178],"participating":[182],"hybrid":[186],"approach":[187],"by":[188,195],"supplementing":[189],"machine-learning":[190],"algorithms":[191],"features":[193],"generated":[194],"gazetteers":[198],"created":[199],"from":[200,205],"data":[203],"external":[206],"resources.":[207],"CONCLUSIONS:":[208],"task":[210],"is":[214,224],"more":[215],"challenging":[216],"than":[217],"that":[218],"identification.":[220],"ShARe":[222],"available":[225],"as":[229],"reference":[231],"future":[234],"studies.":[235]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":20},{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
