{"id":"https://openalex.org/W2183447503","doi":"https://doi.org/10.1136/amiajnl-2013-002456","title":"Semantic analysis of SNOMED CT for a post-coordinated database of histopathology findings","display_name":"Semantic analysis of SNOMED CT for a post-coordinated database of histopathology findings","publication_year":2014,"publication_date":"2014-05-16","ids":{"openalex":"https://openalex.org/W2183447503","doi":"https://doi.org/10.1136/amiajnl-2013-002456","mag":"2183447503","pmid":"https://pubmed.ncbi.nlm.nih.gov/24833774"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-002456","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002456","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/5/885/9517851/21-5-885.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/21/5/885/9517851/21-5-885.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106261512","display_name":"William S. Campbell","orcid":null},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"W. S. Campbell","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037413369","display_name":"James R. Campbell","orcid":"https://orcid.org/0000-0003-0251-4550"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. R. Campbell","raw_affiliation_strings":["Department of Internal Medicine, University of Nebraska Medical Center, Omaha, Nebraska, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, University of Nebraska Medical Center, Omaha, Nebraska, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108433273","display_name":"William W. West","orcid":null},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. W. West","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026637968","display_name":"James C. McClay","orcid":"https://orcid.org/0000-0002-3404-0671"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. C. McClay","raw_affiliation_strings":["Department of Emergency Medicine, University of Nebraska Medical Center, Omaha, Nebraska, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Emergency Medicine, University of Nebraska Medical Center, Omaha, Nebraska, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111613668","display_name":"S. H. Hinrichs","orcid":null},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. H. Hinrichs","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA","institution_ids":["https://openalex.org/I59130452"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5106261512"],"corresponding_institution_ids":["https://openalex.org/I59130452"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":4.2309,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.9461881,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"21","issue":"5","first_page":"885","last_page":"892"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.6920999884605408,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.6920999884605408,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11134","display_name":"Breast Lesions and Carcinomas","score":0.1290999948978424,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10183","display_name":"Breast Cancer Treatment Studies","score":0.018200000748038292,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.9776716828346252},{"id":"https://openalex.org/keywords/systematized-nomenclature-of-medicine","display_name":"Systematized Nomenclature of Medicine","score":0.7479549646377563},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.7053828239440918},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5625247955322266},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.528076171875},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.48002830147743225},{"id":"https://openalex.org/keywords/biopsy","display_name":"Biopsy","score":0.4665268361568451},{"id":"https://openalex.org/keywords/histopathology","display_name":"Histopathology","score":0.46134287118911743},{"id":"https://openalex.org/keywords/anatomical-pathology","display_name":"Anatomical pathology","score":0.4145333468914032},{"id":"https://openalex.org/keywords/medical-physics","display_name":"Medical physics","score":0.40602612495422363},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.18889069557189941},{"id":"https://openalex.org/keywords/immunohistochemistry","display_name":"Immunohistochemistry","score":0.18623405694961548},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.07933813333511353}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.9776716828346252},{"id":"https://openalex.org/C44681071","wikidata":"https://www.wikidata.org/wiki/Q4048820","display_name":"Systematized Nomenclature of Medicine","level":4,"score":0.7479549646377563},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.7053828239440918},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5625247955322266},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.528076171875},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.48002830147743225},{"id":"https://openalex.org/C2775934546","wikidata":"https://www.wikidata.org/wiki/Q179991","display_name":"Biopsy","level":2,"score":0.4665268361568451},{"id":"https://openalex.org/C544855455","wikidata":"https://www.wikidata.org/wiki/Q1070952","display_name":"Histopathology","level":2,"score":0.46134287118911743},{"id":"https://openalex.org/C549673821","wikidata":"https://www.wikidata.org/wiki/Q683455","display_name":"Anatomical pathology","level":3,"score":0.4145333468914032},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.40602612495422363},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.18889069557189941},{"id":"https://openalex.org/C204232928","wikidata":"https://www.wikidata.org/wiki/Q899285","display_name":"Immunohistochemistry","level":2,"score":0.18623405694961548},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.07933813333511353},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001940","descriptor_name":"Breast","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001940","descriptor_name":"Breast","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001940","descriptor_name":"Breast","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010340","descriptor_name":"Pathology, Surgical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010340","descriptor_name":"Pathology, Surgical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010340","descriptor_name":"Pathology, Surgical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2013-002456","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002456","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/5/885/9517851/21-5-885.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:24833774","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24833774","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4147616","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4147616","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-002456","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002456","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/5/885/9517851/21-5-885.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322225","display_name":"Link\u00f6pings Universitet","ror":"https://ror.org/05ynxx418"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2183447503.pdf","grobid_xml":"https://content.openalex.org/works/W2183447503.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W41901557","https://openalex.org/W1771499318","https://openalex.org/W2076617429","https://openalex.org/W2141292206","https://openalex.org/W2192435659","https://openalex.org/W2410357812","https://openalex.org/W2555756618","https://openalex.org/W4253449727","https://openalex.org/W4255897800","https://openalex.org/W4301465612"],"related_works":["https://openalex.org/W2419080317","https://openalex.org/W2965745812","https://openalex.org/W1521603277","https://openalex.org/W3210781900","https://openalex.org/W3196417112","https://openalex.org/W2770499767","https://openalex.org/W2799131595","https://openalex.org/W2670874958","https://openalex.org/W4241243987","https://openalex.org/W2183447503"],"abstract_inverted_index":{"OBJECTIVE:":[0],"This":[1],"research":[2],"investigated":[3],"the":[4,55,76,100,137,150,161,175,200,214],"use":[5,35,167],"of":[6,31,99,139,144,149,168,202,233],"SNOMED":[7,32,111,126,154,162,215],"CT":[8,33,112,127,155,163,216],"to":[9,26,134,173,213,223],"represent":[10,224],"diagnostic":[11,61,69,78,102],"tissue":[12,16,58,179,209],"morphologies":[13,62],"and":[14,60,71,90,104,120,181,211,221,237],"notable":[15],"architectures":[17,59,180],"typically":[18],"found":[19,184],"within":[20,185],"a":[21,186],"pathologist's":[22],"microscopic":[23,65,189,196],"examination":[24,198],"report":[25],"identify":[27],"gaps":[28],"in":[29,36,228],"expressivity":[30],"for":[34,208,231],"anatomic":[37],"pathology.":[38],"METHODS:":[39],"24":[40],"breast":[41,93],"biopsy":[42,95],"cases":[43],"were":[44,73,85],"reviewed":[45],"by":[46,64,109],"two":[47],"board":[48],"certified":[49],"surgical":[50,187],"pathologists":[51],"who":[52],"independently":[53],"described":[54],"diagnostically":[56,177],"important":[57,178],"observed":[63],"examination.":[66,190],"In":[67],"addition,":[68],"comments":[70],"details":[72],"extracted":[74,86],"from":[75,87],"original":[77],"pathology":[79,188,203],"report.":[80],"95":[81],"unique":[82],"clinical":[83,146],"statements":[84,105,141],"13":[88],"malignant":[89],"11":[91],"benign":[92],"needle":[94],"cases.":[96],"RESULTS:":[97],"75%":[98],"inventoried":[101,145],"terms":[103],"could":[106,129],"be":[107,130],"represented":[108],"valid":[110,125],"expressions.":[113,123],"The":[114],"expressions":[115,128,159],"included":[116],"one":[117],"pre-coordinated":[118],"expression":[119],"73":[121],"post-coordinated":[122],"No":[124],"identified":[131],"or":[132,160],"developed":[133],"unambiguously":[135],"assert":[136],"meaning":[138],"21":[140],"(ie,":[142],"25%":[143],"statements).":[147],"Evaluation":[148],"findings":[151,227],"indicated":[152],"that":[153],"lacked":[156],"sufficient":[157],"definitional":[158],"concept":[164,206,217],"model":[165,218],"prohibited":[166],"certain":[169],"defined":[170],"concepts":[171],"needed":[172,220],"describe":[174],"numerous,":[176],"morphologic":[182],"changes":[183],"CONCLUSIONS:":[191],"Because":[192],"information":[193,235],"gathered":[194],"during":[195],"histopathology":[197],"provides":[199],"basis":[201],"diagnoses,":[204],"additional":[205],"definitions":[207],"morphometries":[210],"modifications":[212],"are":[219],"suggested":[222],"detailed":[225],"histopathologic":[226],"computable":[229],"fashion":[230],"purposes":[232],"patient":[234],"exchange":[236],"research.":[238],"TRIAL":[239],"REGISTRATION":[240],"NUMBER:":[241],"UNMC":[242],"Institutional":[243],"Review":[244],"Board":[245],"ID#":[246],"342-11-EP.":[247]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
