{"id":"https://openalex.org/W1838551284","doi":"https://doi.org/10.1136/amiajnl-2013-002214","title":"Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature","display_name":"Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature","publication_year":2013,"publication_date":"2013-08-10","ids":{"openalex":"https://openalex.org/W1838551284","doi":"https://doi.org/10.1136/amiajnl-2013-002214","mag":"1838551284","pmid":"https://pubmed.ncbi.nlm.nih.gov/23935077"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-002214","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002214","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/805/5874426/20-5-805.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/20/5/805/5874426/20-5-805.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084415954","display_name":"Lucila Ohno\u2010Machado","orcid":"https://orcid.org/0000-0002-8005-7327"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Lucila Ohno-Machado","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108276842","display_name":"Prakash M. Nadkarni","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Prakash Nadkarni","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5075324568","display_name":"Kevin Johnson","orcid":"https://orcid.org/0000-0002-2233-2538"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kevin Johnson","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5084415954"],"corresponding_institution_ids":[],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":8.4604,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.97310261,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"5","first_page":"805","last_page":"805"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9537000060081482,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contest","display_name":"CONTEST","score":0.7755751013755798},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7660534381866455},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.6062098145484924},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.593615710735321},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.5893526673316956},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.550052285194397},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5456044673919678},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.5170267224311829},{"id":"https://openalex.org/keywords/structuring","display_name":"Structuring","score":0.5001027584075928},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.47914499044418335},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.4220311939716339},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.41981542110443115},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.268698513507843},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.12996149063110352},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10156676173210144},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.09695696830749512}],"concepts":[{"id":"https://openalex.org/C2777582232","wikidata":"https://www.wikidata.org/wiki/Q5013414","display_name":"CONTEST","level":2,"score":0.7755751013755798},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7660534381866455},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.6062098145484924},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.593615710735321},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.5893526673316956},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.550052285194397},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5456044673919678},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.5170267224311829},{"id":"https://openalex.org/C2775945657","wikidata":"https://www.wikidata.org/wiki/Q381442","display_name":"Structuring","level":2,"score":0.5001027584075928},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.47914499044418335},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.4220311939716339},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.41981542110443115},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.268698513507843},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.12996149063110352},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10156676173210144},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.09695696830749512},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2013-002214","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002214","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/805/5874426/20-5-805.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:23935077","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23935077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:3116264","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3756279","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-002214","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002214","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/805/5874426/20-5-805.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8700000047683716}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1838551284.pdf","grobid_xml":"https://content.openalex.org/works/W1838551284.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2946214509","https://openalex.org/W2606108738","https://openalex.org/W4286740636","https://openalex.org/W2628063975","https://openalex.org/W2356479129","https://openalex.org/W2387346515","https://openalex.org/W2352196451","https://openalex.org/W2590086693","https://openalex.org/W2381260192","https://openalex.org/W3122423648"],"abstract_inverted_index":{"The":[0,39],"increasing":[1],"adoption":[2],"of":[3,28,54,69,99,110,126,131],"electronic":[4],"health":[5],"records":[6,34],"(EHRs)":[7],"and":[8,19,128],"the":[9,26,33,61,83,90,104],"corresponding":[10],"interest":[11],"in":[12,32,57,86,113],"using":[13],"these":[14],"data":[15,55],"for":[16,89,108],"quality":[17],"improvement":[18],"research":[20],"have":[21],"made":[22],"it":[23],"clear":[24],"that":[25,47,79],"interpretation":[27],"narrative":[29,58],"text":[30],"contained":[31,56],"is":[35,42],"a":[36,77,97,100,123],"critical":[37],"step.":[38],"biomedical":[40,72],"literature":[41],"another":[43],"important":[44],"information":[45],"source":[46],"can":[48],"benefit":[49],"from":[50],"approaches":[51,146],"requiring":[52],"structuring":[53],"text.":[59],"For":[60],"first":[62],"time,":[63],"we":[64],"dedicate":[65],"an":[66],"entire":[67],"issue":[68],"JAMIA":[70],"to":[71,102,135],"natural":[73],"language":[74],"processing":[75],"(NLP),":[76],"topic":[78],"has":[80],"been":[81],"among":[82],"most":[84],"cited":[85],"this":[87,137],"journal":[88],"past":[91],"few":[92],"years.":[93],"We":[94],"start":[95],"with":[96],"description":[98,130],"contest":[101],"select":[103],"best":[105],"performing":[106,145],"algorithms":[107],"detection":[109],"temporal":[111],"relationships":[112],"clinical":[114],"documents":[115],"(":[116,139],"see":[117,140],"page":[118,141],"806":[119],"),":[120],"followed":[121],"by":[122],"general":[124],"review":[125],"significance":[127],"brief":[129],"commonly":[132],"used":[133],"methods":[134],"address":[136],"task":[138],"814":[142],").":[143],"Top":[144],"are":[147],"featured":[148],"\u2026":[149]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":5}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
