{"id":"https://openalex.org/W2132609595","doi":"https://doi.org/10.1136/amiajnl-2013-002066","title":"A sea of standards for omics data: sink or swim?","display_name":"A sea of standards for omics data: sink or swim?","publication_year":2013,"publication_date":"2013-09-28","ids":{"openalex":"https://openalex.org/W2132609595","doi":"https://doi.org/10.1136/amiajnl-2013-002066","mag":"2132609595","pmid":"https://pubmed.ncbi.nlm.nih.gov/24076747"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-002066","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002066","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/2/200/9517182/21-2-200.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/21/2/200/9517182/21-2-200.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052549427","display_name":"Jessica D. Tenenbaum","orcid":"https://orcid.org/0000-0003-3532-565X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jessica D Tenenbaum","raw_affiliation_strings":["Duke Translational Medicine Institute, Duke University, Durham, North Carolina, USA","Duke Translational Medicine Institute; Duke University; Durham North Carolina USA"],"affiliations":[{"raw_affiliation_string":"Duke Translational Medicine Institute, Duke University, Durham, North Carolina, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Duke Translational Medicine Institute; Duke University; Durham North Carolina USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008806860","display_name":"Susanna\u2010Assunta Sansone","orcid":"https://orcid.org/0000-0001-5306-5690"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Susanna-Assunta Sansone","raw_affiliation_strings":["Oxford e-Research Centre, University of Oxford,Oxford,UK"],"affiliations":[{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford,Oxford,UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa Haendel","raw_affiliation_strings":["Library and Department of Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, Oregon, USA"],"affiliations":[{"raw_affiliation_string":"Library and Department of Medical Informatics & Clinical Epidemiology, Oregon Health & Science University, Portland, Oregon, USA","institution_ids":["https://openalex.org/I165690674"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052549427"],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":4.6341,"has_fulltext":false,"cited_by_count":67,"citation_normalized_percentile":{"value":0.95661142,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"21","issue":"2","first_page":"200","last_page":"203"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.988099992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sink","display_name":"Sink (geography)","score":0.6363153457641602},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.5314038991928101},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4577464461326599},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25565022230148315},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2533748745918274},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.16601839661598206},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.13063019514083862}],"concepts":[{"id":"https://openalex.org/C143050476","wikidata":"https://www.wikidata.org/wiki/Q194502","display_name":"Sink (geography)","level":2,"score":0.6363153457641602},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.5314038991928101},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4577464461326599},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25565022230148315},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2533748745918274},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.16601839661598206},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.13063019514083862}],"mesh":[{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D046228","descriptor_name":"Microarray Analysis","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2013-002066","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002066","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/2/200/9517182/21-2-200.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:24076747","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24076747","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:2913795","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3932466","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-002066","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-002066","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/2/200/9517182/21-2-200.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.5099999904632568,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G412979241","display_name":null,"funder_award_id":"BB/I000771/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G651559499","display_name":null,"funder_award_id":"BB/I025840/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7775520706","display_name":null,"funder_award_id":"BB/E025080/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320316438","display_name":"Georgia Clinical and Translational Science Alliance","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132609595.pdf","grobid_xml":"https://content.openalex.org/works/W2132609595.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W202207560","https://openalex.org/W582454943","https://openalex.org/W615480689","https://openalex.org/W1969772201","https://openalex.org/W2020718817","https://openalex.org/W2021574953","https://openalex.org/W2022819018","https://openalex.org/W2026836010","https://openalex.org/W2031739072","https://openalex.org/W2038028366","https://openalex.org/W2050554833","https://openalex.org/W2068661518","https://openalex.org/W2084115201","https://openalex.org/W2113142309","https://openalex.org/W2118812883","https://openalex.org/W2122507714","https://openalex.org/W2129425154","https://openalex.org/W2131660156","https://openalex.org/W2136704415","https://openalex.org/W2141297584","https://openalex.org/W2158468565","https://openalex.org/W2257451327","https://openalex.org/W2334245521","https://openalex.org/W2403932916","https://openalex.org/W2500077840","https://openalex.org/W2522000664","https://openalex.org/W2790958857","https://openalex.org/W4206041859","https://openalex.org/W4230327376"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W177137871","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"In":[0],"the":[1,19,40,87,99,108,110,130,134],"era":[2],"of":[3,21,136],"Big":[4],"Data,":[5],"omic-scale":[6],"technologies,":[7],"and":[8,64,132,140],"increasing":[9],"calls":[10],"for":[11,91,98,129],"data":[12,24,35,54,70,111],"sharing,":[13],"it":[14,66],"is":[15,26,32,57,83],"generally":[16],"agreed":[17,30],"that":[18],"use":[20,82,88],"community-developed,":[22],"open":[23],"standards":[25,36,71,80,121],"critical.":[27],"Far":[28],"less":[29],"upon":[31],"exactly":[33],"which":[34,43,69],"should":[37,45,72],"be":[38,73,105],"used,":[39],"criteria":[41],"by":[42],"one":[44],"choose":[46,61],"a":[47,53,62,92,125],"standard,":[48],"or":[49],"even":[50],"what":[51],"constitutes":[52],"standard.":[55],"It":[56],"impossible":[58],"simply":[59],"to":[60,81,144],"domain":[63],"have":[65],"naturally":[67],"follow":[68],"used":[74],"in":[75],"all":[76],"cases.":[77],"The":[78],"'right'":[79],"often":[84],"dependent":[85],"on":[86],"case":[89],"scenarios":[90],"given":[93],"project.":[94],"Potential":[95],"downstream":[96],"applications":[97],"data,":[100],"however,":[101],"may":[102],"not":[103],"always":[104],"apparent":[106],"at":[107],"time":[109],"are":[112,142],"generated.":[113],"Similarly,":[114],"technology":[115],"evolves,":[116],"adding":[117],"further":[118],"complexity.":[119],"Would-be":[120],"adopters":[122],"must":[123],"strike":[124],"balance":[126],"between":[127],"planning":[128],"future":[131],"minimizing":[133],"burden":[135],"compliance.":[137],"Better":[138],"tools":[139],"resources":[141],"required":[143],"help":[145],"guide":[146],"this":[147],"balancing":[148],"act.":[149]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
