{"id":"https://openalex.org/W2162364899","doi":"https://doi.org/10.1136/amiajnl-2013-001635","title":"A hybrid system for temporal information extraction from clinical text","display_name":"A hybrid system for temporal information extraction from clinical text","publication_year":2013,"publication_date":"2013-04-10","ids":{"openalex":"https://openalex.org/W2162364899","doi":"https://doi.org/10.1136/amiajnl-2013-001635","mag":"2162364899","pmid":"https://pubmed.ncbi.nlm.nih.gov/23571849"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-001635","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001635","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/828/5874876/20-5-828.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/20/5/828/5874876/20-5-828.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014238603","display_name":"Buzhou Tang","orcid":"https://orcid.org/0000-0003-0271-8246"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Buzhou Tang","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","Department of Computer Science, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Department of Computer Science, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010253402","display_name":"Yonghui Wu","orcid":"https://orcid.org/0000-0002-6780-6135"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yonghui Wu","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055848133","display_name":"Min Jiang","orcid":"https://orcid.org/0000-0002-1407-0961"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Jiang","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101672477","display_name":"Yukun Chen","orcid":"https://orcid.org/0000-0002-3639-5847"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yukun Chen","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070908224","display_name":"Joshua C. Denny","orcid":"https://orcid.org/0000-0002-3049-7332"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua C Denny","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA","Department of Medicine, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Medicine, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084072550","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0002-5274-4672"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]},{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hua Xu","raw_affiliation_strings":["Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA","School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, Tennessee, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5084072550"],"corresponding_institution_ids":["https://openalex.org/I200719446","https://openalex.org/I919571938"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":19.9259,"has_fulltext":false,"cited_by_count":121,"citation_normalized_percentile":{"value":0.99332196,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"20","issue":"5","first_page":"828","last_page":"835"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.7373861074447632},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7251649498939514},{"id":"https://openalex.org/keywords/temporal-annotation","display_name":"Temporal annotation","score":0.7207039594650269},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6184125542640686},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5585412383079529},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5014941692352295},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.47360754013061523},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.368678480386734},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.327201247215271},{"id":"https://openalex.org/keywords/universal-networking-language","display_name":"Universal Networking Language","score":0.07173037528991699}],"concepts":[{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.7373861074447632},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7251649498939514},{"id":"https://openalex.org/C7044111","wikidata":"https://www.wikidata.org/wiki/Q15844891","display_name":"Temporal annotation","level":5,"score":0.7207039594650269},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6184125542640686},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5585412383079529},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5014941692352295},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.47360754013061523},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.368678480386734},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.327201247215271},{"id":"https://openalex.org/C83479923","wikidata":"https://www.wikidata.org/wiki/Q2063748","display_name":"Universal Networking Language","level":4,"score":0.07173037528991699},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C129353971","wikidata":"https://www.wikidata.org/wiki/Q5156949","display_name":"Comprehension approach","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063886","descriptor_name":"Patient Discharge Summaries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2013-001635","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001635","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/828/5874876/20-5-828.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:23571849","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23571849","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:3116260","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3756274","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-001635","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001635","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/828/5874876/20-5-828.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8199999928474426,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162364899.pdf","grobid_xml":"https://content.openalex.org/works/W2162364899.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W30314283","https://openalex.org/W48671780","https://openalex.org/W99501648","https://openalex.org/W182767159","https://openalex.org/W182966350","https://openalex.org/W1504212872","https://openalex.org/W1543515964","https://openalex.org/W1558788122","https://openalex.org/W1619424147","https://openalex.org/W1956885672","https://openalex.org/W1964135532","https://openalex.org/W1964253000","https://openalex.org/W1966578683","https://openalex.org/W1972238680","https://openalex.org/W1995687988","https://openalex.org/W1998491255","https://openalex.org/W2000363133","https://openalex.org/W2027233318","https://openalex.org/W2031051730","https://openalex.org/W2043243772","https://openalex.org/W2106904379","https://openalex.org/W2107435951","https://openalex.org/W2126911581","https://openalex.org/W2137312098","https://openalex.org/W2137407193","https://openalex.org/W2140244223","https://openalex.org/W2146089916","https://openalex.org/W2151363315","https://openalex.org/W2161484642","https://openalex.org/W2167540062","https://openalex.org/W2407338347","https://openalex.org/W2614752654","https://openalex.org/W2793796751","https://openalex.org/W2912832745","https://openalex.org/W2913798560","https://openalex.org/W2914560649"],"related_works":["https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2126911581","https://openalex.org/W2165504147"],"abstract_inverted_index":{"Our":[0],"system":[1],"was":[2],"among":[3],"the":[4,33],"top":[5],"ranked.":[6],"It":[7],"achieved":[8],"F-measures":[9],"of":[10,53],"0.8659":[11],"for":[12,19,27,40,55],"temporal":[13],"expression":[14],"extraction":[15],"(ranked":[16,23,30],"fourth),":[17],"0.6278":[18],"end-to-end":[20],"TLink":[21,41],"track":[22,29],"first),":[24],"and":[25,43],"0.6932":[26],"TLink-only":[28,56],"first)":[31],"in":[32],"challenge.":[34],"We":[35],"subsequently":[36],"investigated":[37],"different":[38],"strategies":[39],"extraction,":[42],"were":[44],"able":[45],"to":[46],"marginally":[47],"improve":[48],"performance":[49],"with":[50],"an":[51],"F-measure":[52],"0.6943":[54],"track.":[57]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":10}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
