{"id":"https://openalex.org/W2160241709","doi":"https://doi.org/10.1136/amiajnl-2013-001619","title":"A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text","display_name":"A flexible framework for recognizing events, temporal expressions, and temporal relations in clinical text","publication_year":2013,"publication_date":"2013-05-18","ids":{"openalex":"https://openalex.org/W2160241709","doi":"https://doi.org/10.1136/amiajnl-2013-001619","mag":"2160241709","pmid":"https://pubmed.ncbi.nlm.nih.gov/23686936"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-001619","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001619","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/867/17374811/20-5-867.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/20/5/867/17374811/20-5-867.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046709245","display_name":"Kirk Roberts","orcid":"https://orcid.org/0000-0001-6525-5213"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kirk Roberts","raw_affiliation_strings":["Human Language Technology Research Institute, The University of Texas at Dallas, Richardson, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Language Technology Research Institute, The University of Texas at Dallas, Richardson, Texas, USA","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017078976","display_name":"Bryan Rink","orcid":null},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Rink","raw_affiliation_strings":["Human Language Technology Research Institute, The University of Texas at Dallas, Richardson, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Language Technology Research Institute, The University of Texas at Dallas, Richardson, Texas, USA","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014682058","display_name":"Sanda M. Harabagiu","orcid":"https://orcid.org/0000-0002-8186-1501"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanda M Harabagiu","raw_affiliation_strings":["Human Language Technology Research Institute, The University of Texas at Dallas, Richardson, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human Language Technology Research Institute, The University of Texas at Dallas, Richardson, Texas, USA","institution_ids":["https://openalex.org/I162577319"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5046709245"],"corresponding_institution_ids":["https://openalex.org/I162577319"],"apc_list":{"value":4332,"currency":"USD","value_usd":4332},"apc_paid":null,"fwci":2.6113,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.90391984,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"20","issue":"5","first_page":"867","last_page":"875"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6858999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6858999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.07840000092983246,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.07500000298023224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.713054358959198},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5530654191970825},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5317063927650452},{"id":"https://openalex.org/keywords/temporal-annotation","display_name":"Temporal annotation","score":0.4943993091583252},{"id":"https://openalex.org/keywords/temporal-database","display_name":"Temporal database","score":0.4529094994068146},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.2927698493003845},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.18113869428634644},{"id":"https://openalex.org/keywords/universal-networking-language","display_name":"Universal Networking Language","score":0.07388702034950256}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.713054358959198},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5530654191970825},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5317063927650452},{"id":"https://openalex.org/C7044111","wikidata":"https://www.wikidata.org/wiki/Q15844891","display_name":"Temporal annotation","level":5,"score":0.4943993091583252},{"id":"https://openalex.org/C77277458","wikidata":"https://www.wikidata.org/wiki/Q1969246","display_name":"Temporal database","level":2,"score":0.4529094994068146},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.2927698493003845},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18113869428634644},{"id":"https://openalex.org/C83479923","wikidata":"https://www.wikidata.org/wiki/Q2063748","display_name":"Universal Networking Language","level":4,"score":0.07388702034950256},{"id":"https://openalex.org/C129353971","wikidata":"https://www.wikidata.org/wiki/Q5156949","display_name":"Comprehension approach","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013995","descriptor_name":"Time","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2013-001619","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001619","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/867/17374811/20-5-867.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:23686936","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23686936","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3116255","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3756268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-001619","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001619","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/867/17374811/20-5-867.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1206153511","display_name":null,"funder_award_id":"U54-LM008748","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4257107804","display_name":null,"funder_award_id":"R13LM011411","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2160241709.pdf","grobid_xml":"https://content.openalex.org/works/W2160241709.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W3189954","https://openalex.org/W30314283","https://openalex.org/W131482884","https://openalex.org/W192665053","https://openalex.org/W1508977358","https://openalex.org/W1530904964","https://openalex.org/W1571872475","https://openalex.org/W1619424147","https://openalex.org/W1672757658","https://openalex.org/W1725023857","https://openalex.org/W1840275551","https://openalex.org/W1956885672","https://openalex.org/W1964135532","https://openalex.org/W1970941672","https://openalex.org/W2014915963","https://openalex.org/W2058070641","https://openalex.org/W2060381885","https://openalex.org/W2082035741","https://openalex.org/W2114039834","https://openalex.org/W2118585731","https://openalex.org/W2121227244","https://openalex.org/W2126166543","https://openalex.org/W2133922875","https://openalex.org/W2137407193","https://openalex.org/W2138623081","https://openalex.org/W2140244223","https://openalex.org/W2158139315","https://openalex.org/W2158188757","https://openalex.org/W2158390956","https://openalex.org/W2162311237","https://openalex.org/W2168041406","https://openalex.org/W2250767920","https://openalex.org/W2251758222","https://openalex.org/W2293262013"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W3204019825","https://openalex.org/W2155170983","https://openalex.org/W3041921904"],"abstract_inverted_index":{"OBJECTIVE:":[0],"To":[1],"provide":[2],"a":[3,184],"natural":[4],"language":[5],"processing":[6],"method":[7,76,154,170,194],"for":[8,60,85],"the":[9,55,82,89,141,145,151,163,190,206,253],"automatic":[10],"recognition":[11,134,153,169,193],"of":[12,27,58,101,108,116,125,140,178,187,255],"events,":[13],"temporal":[14,17,105,112,121,167,191,221,244],"expressions,":[15],"and":[16,30,41,88,118,200,220,230,243],"relations":[18],"in":[19,74,144,162],"clinical":[20],"records.":[21],"MATERIALS":[22],"AND":[23],"METHODS:":[24],"A":[25,45],"combination":[26],"supervised,":[28],"unsupervised,":[29],"rule-based":[31],"methods":[32,36,65],"were":[33],"used.":[34],"Supervised":[35],"include":[37,66],"conditional":[38],"random":[39],"fields":[40],"support":[42],"vector":[43],"machines.":[44],"flexible":[46],"automated":[47],"feature":[48],"selection":[49],"technique":[50],"was":[51,131],"used":[52],"to":[53,160,183],"select":[54],"best":[56],"subset":[57],"features":[59],"each":[61],"supervised":[62,229],"task.":[63,147],"Unsupervised":[64],"Brown":[67],"clustering":[68],"on":[69,252],"several":[70],"corpora,":[71],"which":[72,136,158],"result":[73],"our":[75,132],"being":[77],"considered":[78],"semisupervised.":[79],"RESULTS:":[80],"On":[81],"2012":[83],"Informatics":[84],"Integrating":[86],"Biology":[87],"Bedside":[90],"(i2b2)":[91],"shared":[92],"task":[93],"data,":[94],"we":[95],"achieved":[96,225],"an":[97,103,110,119],"overall":[98,104,111],"event":[99,133,146,152,164],"F1-measure":[100,107,115,124],"0.8045,":[102],"expression":[106,168],"0.6154,":[109],"link":[113,122],"detection":[114,123],"0.5594,":[117],"end-to-end":[120],"0.5258.":[126],"The":[127,166],"most":[128],"competitive":[129],"system":[130],"method,":[135],"ranked":[137],"third":[138],"out":[139],"14":[142],"participants":[143],"DISCUSSION:":[148],"Analysis":[149],"reveals":[150],"has":[155],"difficulty":[156],"determining":[157],"modifiers":[159],"include/exclude":[161],"span.":[165],"requires":[171,195],"significantly":[172],"more":[173,196,213,250],"normalization":[174,242],"rules,":[175],"although":[176],"many":[177],"these":[179],"rules":[180],"apply":[181],"only":[182,235],"small":[185],"number":[186],"cases.":[188],"Finally,":[189],"relation":[192,209,245],"advanced":[197],"medical":[198,237,256],"knowledge":[199,238],"could":[201],"be":[202,224],"improved":[203],"by":[204,227],"separating":[205],"single":[207],"discourse":[208],"classifier":[210],"into":[211],"multiple,":[212],"targeted":[214],"component":[215],"classifiers.":[216],"CONCLUSIONS:":[217],"Recognizing":[218],"events":[219],"expressions":[222],"can":[223],"accurately":[226],"combining":[228],"unsupervised":[231],"methods,":[232],"even":[233],"when":[234],"minimal":[236],"is":[239],"available.":[240],"Temporal":[241],"recognition,":[246],"however,":[247],"are":[248],"far":[249],"dependent":[251],"modeling":[254],"knowledge.":[257]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5}],"updated_date":"2026-08-22T07:34:49.880490","created_date":"2025-10-10T00:00:00"}
