{"id":"https://openalex.org/W2232325453","doi":"https://doi.org/10.1136/amiajnl-2013-001612","title":"Mining clinical text for signals of adverse drug-drug interactions","display_name":"Mining clinical text for signals of adverse drug-drug interactions","publication_year":2013,"publication_date":"2013-10-25","ids":{"openalex":"https://openalex.org/W2232325453","doi":"https://doi.org/10.1136/amiajnl-2013-001612","mag":"2232325453","pmid":"https://pubmed.ncbi.nlm.nih.gov/24158091"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2013-001612","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001612","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/2/353/6114478/21-2-353.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/21/2/353/6114478/21-2-353.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088004913","display_name":"Srinivasan Iyer","orcid":"https://orcid.org/0000-0002-6186-2603"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Srinivasan V Iyer","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043102729","display_name":"Rave Harpaz","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rave Harpaz","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059906626","display_name":"Paea LePendu","orcid":"https://orcid.org/0000-0001-7358-931X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paea LePendu","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030710827","display_name":"Anna Bauer\u2010Mehren","orcid":"https://orcid.org/0000-0001-8905-9161"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Bauer-Mehren","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nigam H Shah","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5088004913"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":5.6896,"has_fulltext":false,"cited_by_count":172,"citation_normalized_percentile":{"value":0.96912822,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"21","issue":"2","first_page":"353","last_page":"362"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.7767418622970581},{"id":"https://openalex.org/keywords/adverse-effect","display_name":"Adverse effect","score":0.46383604407310486},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4630480110645294},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.447897732257843},{"id":"https://openalex.org/keywords/adverse-drug-reaction","display_name":"Adverse drug reaction","score":0.43458032608032227},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.33398354053497314},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2857365608215332}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.7767418622970581},{"id":"https://openalex.org/C197934379","wikidata":"https://www.wikidata.org/wiki/Q2047938","display_name":"Adverse effect","level":2,"score":0.46383604407310486},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4630480110645294},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.447897732257843},{"id":"https://openalex.org/C2780542314","wikidata":"https://www.wikidata.org/wiki/Q45959","display_name":"Adverse drug reaction","level":3,"score":0.43458032608032227},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.33398354053497314},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2857365608215332}],"mesh":[{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1136/amiajnl-2013-001612","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001612","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/2/353/6114478/21-2-353.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:24158091","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24158091","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt8v1489sh","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/8v1489sh","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of the American Medical Informatics Association, vol 21, iss 2","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3306858","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3932451","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2013-001612","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2013-001612","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/2/353/6114478/21-2-353.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6299999952316284,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320307856","display_name":"World Health Organization","ror":"https://ror.org/01f80g185"},{"id":"https://openalex.org/F4320308757","display_name":"Foundation for Anesthesia Education and Research","ror":"https://ror.org/04d16a047"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333491","display_name":"Palo Alto Medical Foundation","ror":null},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2232325453.pdf","grobid_xml":"https://content.openalex.org/works/W2232325453.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W27189800","https://openalex.org/W45588658","https://openalex.org/W91361357","https://openalex.org/W311004003","https://openalex.org/W1492818624","https://openalex.org/W1616099694","https://openalex.org/W1960737837","https://openalex.org/W1967555951","https://openalex.org/W1969879564","https://openalex.org/W1981809734","https://openalex.org/W1989986729","https://openalex.org/W1994929347","https://openalex.org/W1995077739","https://openalex.org/W2002430005","https://openalex.org/W2004281677","https://openalex.org/W2007138823","https://openalex.org/W2009313526","https://openalex.org/W2012487908","https://openalex.org/W2019515024","https://openalex.org/W2021372314","https://openalex.org/W2021805817","https://openalex.org/W2021920492","https://openalex.org/W2023141245","https://openalex.org/W2026447576","https://openalex.org/W2029592334","https://openalex.org/W2031299502","https://openalex.org/W2038397660","https://openalex.org/W2039594635","https://openalex.org/W2040555718","https://openalex.org/W2057881684","https://openalex.org/W2065176229","https://openalex.org/W2088263677","https://openalex.org/W2091582819","https://openalex.org/W2093015714","https://openalex.org/W2098730643","https://openalex.org/W2103018059","https://openalex.org/W2106417713","https://openalex.org/W2107516065","https://openalex.org/W2109482131","https://openalex.org/W2110922423","https://openalex.org/W2112656327","https://openalex.org/W2115259143","https://openalex.org/W2117397379","https://openalex.org/W2118415328","https://openalex.org/W2119002393","https://openalex.org/W2122532950","https://openalex.org/W2126344780","https://openalex.org/W2133629218","https://openalex.org/W2142572836","https://openalex.org/W2147845824","https://openalex.org/W2148288796","https://openalex.org/W2154048976","https://openalex.org/W2161554615","https://openalex.org/W2168528736","https://openalex.org/W2171548451","https://openalex.org/W2339812389","https://openalex.org/W2410165175","https://openalex.org/W2517346518","https://openalex.org/W3085323863","https://openalex.org/W3122049309","https://openalex.org/W4230604660","https://openalex.org/W4246192712","https://openalex.org/W4251624698","https://openalex.org/W4292198115"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725","https://openalex.org/W2148612803"],"abstract_inverted_index":{"It":[0],"is":[1],"feasible":[2],"to":[3],"identify":[4],"DDI":[5],"signals":[6],"and":[7],"estimate":[8],"the":[9],"rate":[10],"of":[11],"adverse":[12],"events":[13],"among":[14],"patients":[15],"on":[16],"drug":[17,29],"combinations,":[18],"directly":[19],"from":[20],"clinical":[21,36],"text;":[22],"this":[23],"could":[24],"have":[25],"utility":[26],"in":[27,35],"prioritizing":[28],"interaction":[30],"surveillance":[31],"as":[32,34],"well":[33],"decision":[37],"support.":[38]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":6}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
