{"id":"https://openalex.org/W2154813452","doi":"https://doi.org/10.1136/amiajnl-2012-001469","title":"Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data","display_name":"Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data","publication_year":2013,"publication_date":"2013-07-27","ids":{"openalex":"https://openalex.org/W2154813452","doi":"https://doi.org/10.1136/amiajnl-2012-001469","mag":"2154813452","pmid":"https://pubmed.ncbi.nlm.nih.gov/23893318"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2012-001469","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001469","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/6/1091/17374642/20-6-1091.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/20/6/1091/17374642/20-6-1091.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073937900","display_name":"David A. Gutman","orcid":"https://orcid.org/0000-0002-1386-8701"},"institutions":[{"id":"https://openalex.org/I4210100202","display_name":"Piedmont Cancer Institute","ror":"https://ror.org/011w7ja64","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210100202"]},{"id":"https://openalex.org/I4390039307","display_name":"Winship Cancer Institute","ror":"https://ror.org/02gars961","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I132943300","https://openalex.org/I4390039307"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David A Gutman","raw_affiliation_strings":["Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","Winship Cancer Institute, Atlanta, Georgia, USA","Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Winship Cancer Institute, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I4210100202","https://openalex.org/I4390039307"]},{"raw_affiliation_string":"Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049342490","display_name":"Jake Cobb","orcid":null},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jake Cobb","raw_affiliation_strings":["College of Computing, Georgia Institute of Technology, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computing, Georgia Institute of Technology, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026447097","display_name":"Dhananjaya Somanna","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dhananjaya Somanna","raw_affiliation_strings":["Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108104223","display_name":"Yuna Park","orcid":"https://orcid.org/0009-0004-5718-8558"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuna Park","raw_affiliation_strings":["Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100704639","display_name":"Fusheng Wang","orcid":"https://orcid.org/0000-0002-9369-9361"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fusheng Wang","raw_affiliation_strings":["Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037383891","display_name":"Tahsin Kur\u00e7","orcid":"https://orcid.org/0000-0001-9237-4306"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tahsin Kurc","raw_affiliation_strings":["Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072946826","display_name":"Joel Saltz","orcid":"https://orcid.org/0000-0002-3451-2165"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel H Saltz","raw_affiliation_strings":["Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","Department of Pathology and Laboratory Medicine, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Atlanta, Georgia, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078484855","display_name":"Daniel J. Brat","orcid":"https://orcid.org/0000-0002-0633-6563"},"institutions":[{"id":"https://openalex.org/I4390039307","display_name":"Winship Cancer Institute","ror":"https://ror.org/02gars961","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I132943300","https://openalex.org/I4390039307"]},{"id":"https://openalex.org/I4210100202","display_name":"Piedmont Cancer Institute","ror":"https://ror.org/011w7ja64","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210100202"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J Brat","raw_affiliation_strings":["Department of Pathology and Laboratory Medicine, Atlanta, Georgia, USA","Winship Cancer Institute, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology and Laboratory Medicine, Atlanta, Georgia, USA","institution_ids":[]},{"raw_affiliation_string":"Winship Cancer Institute, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I4210100202","https://openalex.org/I4390039307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034820084","display_name":"Lee Cooper","orcid":"https://orcid.org/0000-0002-3504-4965"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I4390039307","display_name":"Winship Cancer Institute","ror":"https://ror.org/02gars961","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I132943300","https://openalex.org/I4390039307"]},{"id":"https://openalex.org/I4210100202","display_name":"Piedmont Cancer Institute","ror":"https://ror.org/011w7ja64","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210100202"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee A D Cooper","raw_affiliation_strings":["Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","Winship Cancer Institute, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Comprehensive Informatics, Emory University, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University School of Medicine, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Winship Cancer Institute, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I4210100202","https://openalex.org/I4390039307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066949209","display_name":"Jun Kong","orcid":"https://orcid.org/0000-0001-8757-8339"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jun Kong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5073937900"],"corresponding_institution_ids":["https://openalex.org/I150468666","https://openalex.org/I4210100202","https://openalex.org/I4390039307"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":{"value":3967,"currency":"USD","value_usd":3967},"fwci":12.8494,"has_fulltext":true,"cited_by_count":204,"citation_normalized_percentile":{"value":0.98610912,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"20","issue":"6","first_page":"1091","last_page":"1098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.6406999826431274,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.6406999826431274,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.060600001364946365,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.04740000143647194,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7006600499153137},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.6623274087905884},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.5835698246955872},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5444222688674927},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5201980471611023},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5143386125564575},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48235172033309937},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.46123006939888},{"id":"https://openalex.org/keywords/health-informatics-tools","display_name":"Health informatics tools","score":0.4230499267578125},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4027928411960602},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3395450711250305},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3252444267272949},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.22190791368484497},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18238472938537598},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16939929127693176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15803015232086182},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.15322259068489075}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7006600499153137},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.6623274087905884},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.5835698246955872},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5444222688674927},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5201980471611023},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5143386125564575},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48235172033309937},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.46123006939888},{"id":"https://openalex.org/C167785021","wikidata":"https://www.wikidata.org/wiki/Q5691083","display_name":"Health informatics tools","level":3,"score":0.4230499267578125},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4027928411960602},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3395450711250305},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3252444267272949},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.22190791368484497},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18238472938537598},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16939929127693176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15803015232086182},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.15322259068489075},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001271","descriptor_name":"Atlases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D010338","descriptor_name":"Pathology, Clinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010338","descriptor_name":"Pathology, Clinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010338","descriptor_name":"Pathology, Clinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010338","descriptor_name":"Pathology, Clinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010338","descriptor_name":"Pathology, Clinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2012-001469","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001469","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/6/1091/17374642/20-6-1091.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:23893318","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23893318","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3822112","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3822112","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2012-001469","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001469","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/6/1091/17374642/20-6-1091.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2551140178","display_name":null,"funder_award_id":"R01LM009239","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3017721840","display_name":null,"funder_award_id":"R01LM009239","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4519693722","display_name":null,"funder_award_id":"HHSN261200800001E","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6188259077","display_name":null,"funder_award_id":"R01LM011119","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320310224","display_name":"Georgia Research Alliance","ror":"https://ror.org/030689123"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154813452.pdf","grobid_xml":"https://content.openalex.org/works/W2154813452.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W80258794","https://openalex.org/W190927549","https://openalex.org/W1788176013","https://openalex.org/W1920633366","https://openalex.org/W1978874224","https://openalex.org/W1993456074","https://openalex.org/W2005393216","https://openalex.org/W2007570746","https://openalex.org/W2011793809","https://openalex.org/W2014485346","https://openalex.org/W2019695552","https://openalex.org/W2083494597","https://openalex.org/W2097486055","https://openalex.org/W2100013390","https://openalex.org/W2106918289","https://openalex.org/W2110243528","https://openalex.org/W2110265246","https://openalex.org/W2139484679","https://openalex.org/W2139824828","https://openalex.org/W2167837963","https://openalex.org/W2417444687","https://openalex.org/W4214890688","https://openalex.org/W4252444888"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W2914293784","https://openalex.org/W2407382301","https://openalex.org/W1495820741","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W2401910071","https://openalex.org/W2189429352","https://openalex.org/W4302329558","https://openalex.org/W1971571384"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,19,39,111,137],"integration":[2],"and":[3,36,43,71,87,95,104,124,154,159,175,185,205,232],"visualization":[4,86],"of":[5,18,41,139,172,183,196,214,218],"multimodal":[6],"datasets":[7,145],"is":[8,118],"a":[9,54],"common":[10],"challenge":[11],"in":[12,32,157,226],"biomedical":[13],"informatics.":[14],"Several":[15],"recent":[16],"studies":[17],"Cancer":[20,106,112],"Genome":[21],"Atlas":[22],"(TCGA)":[23],"data":[24,73,88,97],"have":[25],"illustrated":[26],"important":[27,225],"relationships":[28],"between":[29],"morphology":[30],"observed":[31],"whole-slide":[33,48,83,130,173,215],"images,":[34,174],"outcome,":[35],"genetic":[37],"events.":[38],"pairing":[40],"genomics":[42],"rich":[44],"clinical":[45,233],"descriptions":[46],"with":[47,150,230],"imaging":[49,149],"provided":[50],"by":[51],"TCGA":[52,103,144],"presents":[53],"unique":[55],"opportunity":[56],"to":[57,67,120,146,163],"perform":[58],"these":[59],"correlative":[60],"studies.":[61],"However,":[62],"better":[63],"tools":[64],"are":[65,141],"needed":[66],"integrate":[68,147],"the":[69,102,121,194,211],"vast":[70],"disparate":[72],"types.":[74,135,166],"OBJECTIVE:":[75],"To":[76],"build":[77],"an":[78],"integrated":[79],"web-based":[80],"platform":[81],"supporting":[82],"pathology":[84,148,220],"image":[85],"integration.":[89],"MATERIALS":[90],"AND":[91],"METHODS:":[92],"All":[93],"images":[94,131,221],"genomic":[96,153,231],"were":[98],"directly":[99,180],"obtained":[100],"from":[101,132],"National":[105],"Institute":[107],"(NCI)":[108],"websites.":[109],"RESULTS:":[110],"Digital":[113],"Slide":[114],"Archive":[115],"(CDSA)":[116],"produced":[117],"accessible":[119],"public":[122],"(http://cancer.digitalslidearchive.net)":[123],"currently":[125],"hosts":[126],"more":[127],"than":[128],"20,000":[129],"22":[133],"cancer":[134],"DISCUSSION:":[136],"capabilities":[138],"CDSA":[140,167],"demonstrated":[142],"using":[143],"associated":[151],"clinical,":[152],"MRI":[155],"measurements":[156],"glioblastomas":[158],"can":[160,189],"be":[161,191],"extended":[162],"other":[164,186,197,206],"tumor":[165],"also":[168,190],"allows":[169],"URL-based":[170],"sharing":[171,181],"has":[176],"preliminary":[177],"support":[178],"for":[179],"regions":[182],"interest":[184],"annotations.":[187],"Images":[188],"selected":[192],"on":[193],"basis":[195],"metadata,":[198],"such":[199],"as":[200],"mutational":[201],"profile,":[202],"patient":[203],"age,":[204],"relevant":[207],"characteristics.":[208],"CONCLUSIONS:":[209],"With":[210],"increasing":[212],"availability":[213],"scanners,":[216],"analysis":[217],"digitized":[219],"will":[222],"become":[223],"increasingly":[224],"linking":[227],"morphologic":[228],"observations":[229],"endpoints.":[234]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":19},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":21},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-15T08:27:34.491423","created_date":"2025-10-10T00:00:00"}
