{"id":"https://openalex.org/W2109507238","doi":"https://doi.org/10.1136/amiajnl-2012-001347","title":"Automatically extracting sentences from Medline citations to support clinicians' information needs","display_name":"Automatically extracting sentences from Medline citations to support clinicians' information needs","publication_year":2012,"publication_date":"2012-10-25","ids":{"openalex":"https://openalex.org/W2109507238","doi":"https://doi.org/10.1136/amiajnl-2012-001347","mag":"2109507238"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2012-001347","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001347","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/995/9517867/20-5-995.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/20/5/995/9517867/20-5-995.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056672185","display_name":"Siddhartha Jonnalagadda","orcid":"https://orcid.org/0000-0003-3299-6052"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Siddhartha Reddy Jonnalagadda","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA","Department of Health Sciences Research; Mayo Clinic; Rochester Minnesota USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research; Mayo Clinic; Rochester Minnesota USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052456187","display_name":"Guilherme Del Fiol","orcid":"https://orcid.org/0000-0001-9954-6799"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guilherme Del Fiol","raw_affiliation_strings":["Department of Biomedical Informatics, University of Utah, Salt Lake City, Utah, USA","University of Utah,"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Utah, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"University of Utah,","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031654455","display_name":"Richard P. Medlin","orcid":"https://orcid.org/0000-0002-4029-1717"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Medlin","raw_affiliation_strings":["Information and Library Science, University of North Carolina, Chapel Hill, North Carolina, USA","University of North Carolina"],"affiliations":[{"raw_affiliation_string":"Information and Library Science, University of North Carolina, Chapel Hill, North Carolina, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016232569","display_name":"Charlene Weir","orcid":"https://orcid.org/0000-0002-8297-2860"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]},{"id":"https://openalex.org/I4210095710","display_name":"Lake City VA Medical Center","ror":"https://ror.org/00nvney28","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210095710","https://openalex.org/I4210118777","https://openalex.org/I4210119004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charlene Weir","raw_affiliation_strings":["Department of Biomedical Informatics, University of Utah, Salt Lake City, Utah, USA","VA Medical Center, Salt Lake City, Utah, USA","VA Medical Center","University of Utah"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Utah, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"VA Medical Center, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210095710"]},{"raw_affiliation_string":"VA Medical Center","institution_ids":[]},{"raw_affiliation_string":"University of Utah","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062552700","display_name":"Marcelo Fiszman","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcelo Fiszman","raw_affiliation_strings":["Lister Hill Center, National Library of Medicine, Bethesda, Maryland, USA","National Institutes of Health"],"affiliations":[{"raw_affiliation_string":"Lister Hill Center, National Library of Medicine, Bethesda, Maryland, USA","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004243939","display_name":"Javed Mostafa","orcid":"https://orcid.org/0000-0002-4628-7583"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Javed Mostafa","raw_affiliation_strings":["Information and Library Science, University of North Carolina, Chapel Hill, North Carolina, USA","University of North Carolina"],"affiliations":[{"raw_affiliation_string":"Information and Library Science, University of North Carolina, Chapel Hill, North Carolina, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA","Mayo Clinic Rochester-MN"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Rochester, Minnesota, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Mayo Clinic Rochester-MN","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5056672185"],"corresponding_institution_ids":["https://openalex.org/I4210146710"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":2.5499,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.89936491,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"5","first_page":"995","last_page":"1000"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11744","display_name":"Health Sciences Research and Education","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9642000198364258,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6737195253372192},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.6633118391036987},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5778282880783081},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.5174199342727661},{"id":"https://openalex.org/keywords/information-needs","display_name":"Information needs","score":0.502910315990448},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.49199792742729187},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.4454037547111511},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.41535085439682007},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.28996923565864563},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18485799431800842}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6737195253372192},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.6633118391036987},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5778282880783081},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.5174199342727661},{"id":"https://openalex.org/C78999398","wikidata":"https://www.wikidata.org/wiki/Q2899888","display_name":"Information needs","level":2,"score":0.502910315990448},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.49199792742729187},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.4454037547111511},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.41535085439682007},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.28996923565864563},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18485799431800842},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1136/amiajnl-2012-001347","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001347","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/995/9517867/20-5-995.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3116248","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3756259","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2012-001347","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001347","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/995/9517867/20-5-995.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.7300000190734863,"display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109507238.pdf","grobid_xml":"https://content.openalex.org/works/W2109507238.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W257074533","https://openalex.org/W1525595230","https://openalex.org/W1642030641","https://openalex.org/W1854214752","https://openalex.org/W1965316693","https://openalex.org/W1967200031","https://openalex.org/W1976117037","https://openalex.org/W1989217037","https://openalex.org/W1990307331","https://openalex.org/W1996864496","https://openalex.org/W2002135832","https://openalex.org/W2009624591","https://openalex.org/W2021366071","https://openalex.org/W2031614194","https://openalex.org/W2056325010","https://openalex.org/W2093025570","https://openalex.org/W2099964107","https://openalex.org/W2101237612","https://openalex.org/W2109429447","https://openalex.org/W2111437636","https://openalex.org/W2111561507","https://openalex.org/W2117446654","https://openalex.org/W2120992942","https://openalex.org/W2131059515","https://openalex.org/W2132781587","https://openalex.org/W2143379389","https://openalex.org/W2146089916","https://openalex.org/W2153958459","https://openalex.org/W2156339525","https://openalex.org/W2158528902","https://openalex.org/W2159583324","https://openalex.org/W2752885492","https://openalex.org/W2970030445","https://openalex.org/W3145128584","https://openalex.org/W4229668175","https://openalex.org/W4250755387","https://openalex.org/W4296300888","https://openalex.org/W4301056162"],"related_works":["https://openalex.org/W2375873920","https://openalex.org/W2146114872","https://openalex.org/W2392060890","https://openalex.org/W2392760275","https://openalex.org/W2083530853","https://openalex.org/W2982905616","https://openalex.org/W2009831055","https://openalex.org/W2393172683","https://openalex.org/W3211744874","https://openalex.org/W1994626569"],"abstract_inverted_index":{"Objective":[0],"Online":[1],"health":[2],"knowledge":[3,47,128,169,234],"resources":[4,29,170,235],"contain":[5],"answers":[6],"to":[7,74,115,167,186,195,210,218],"most":[8,187],"of":[9,19,27,35,44,55,101,103,118,122,144,150,159,163,174,198],"the":[10,17,25,42,90,109,116,123,142,164,172,196,199],"information":[11,67,71,139,223,237],"needs":[12,140,224],"raised":[13],"by":[14],"clinicians":[15,220],"in":[16,85,108],"course":[18],"care.":[20,145,175],"However,":[21],"significant":[22],"barriers":[23,166],"limit":[24],"use":[26],"these":[28],"for":[30,49,93,137,232],"decision-making,":[31],"especially":[32],"clinicians'":[33,157],"lack":[34,158],"time.":[36],"In":[37],"this":[38,83],"study":[39,131],"we":[40],"assessed":[41,82],"feasibility":[43],"automatically":[45],"generating":[46],"summaries":[48],"a":[50,130],"particular":[51],"clinical":[52],"topic":[53,117],"composed":[54],"relevant":[56,76,114,124,151],"sentences":[57,77,106,125,152,188,202],"extracted":[58],"from":[59,78],"Medline":[60,79],"citations.":[61],"Methods":[62],"The":[63,147,227],"proposed":[64,215],"approach":[65,84,217,228],"combines":[66],"retrieval":[68],"and":[69,95,201,205,236],"semantic":[70],"extraction":[72],"techniques":[73],"identify":[75],"abstracts.":[80],"We":[81],"two":[86,110],"case":[87,111],"studies":[88,112],"on":[89],"treatment":[91,204],"alternatives":[92],"depression":[94],"Alzheimer's":[96],"disease.":[97],"Results":[98],"A":[99],"total":[100],"515":[102],"564":[104],"(91.3%)":[105],"retrieved":[107],"were":[113,208],"interest.":[119],"About":[120],"one-third":[121],"described":[126],"factual":[127],"or":[129],"conclusion":[132],"that":[133,156],"can":[134,229],"be":[135,211,230],"used":[136],"supporting":[138],"at":[141,171],"point":[143,173],"Conclusions":[146],"high":[148],"rate":[149],"is":[153,161,225],"desirable,":[154],"given":[155],"time":[160],"one":[162],"main":[165],"using":[168],"Sentence":[176],"rank":[177],"was":[178],"not":[179],"significantly":[180],"associated":[181],"with":[182,203],"relevancy,":[183],"possibly":[184],"due":[185],"being":[189],"highly":[190],"relevant.":[191],"Sentences":[192],"located":[193],"closer":[194],"end":[197],"abstract":[200],"comparative":[206],"predications":[207],"likely":[209],"conclusive":[212],"sentences.":[213],"Our":[214],"technical":[216],"helping":[219],"meet":[221],"their":[222],"promising.":[226],"extended":[231],"other":[233],"need":[238],"types.":[239]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
