{"id":"https://openalex.org/W2129038679","doi":"https://doi.org/10.1136/amiajnl-2012-001173","title":"Using rule-based natural language processing to improve disease normalization in biomedical text","display_name":"Using rule-based natural language processing to improve disease normalization in biomedical text","publication_year":2012,"publication_date":"2012-10-07","ids":{"openalex":"https://openalex.org/W2129038679","doi":"https://doi.org/10.1136/amiajnl-2012-001173","mag":"2129038679","pmid":"https://pubmed.ncbi.nlm.nih.gov/23043124"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2012-001173","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001173","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/876/17374826/20-5-876.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/20/5/876/17374826/20-5-876.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076346443","display_name":"Kang Ning","orcid":"https://orcid.org/0000-0003-3325-5387"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Ning Kang","raw_affiliation_strings":["Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034080499","display_name":"Bharat Singh","orcid":"https://orcid.org/0000-0001-9290-1225"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Bharat Singh","raw_affiliation_strings":["Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048053757","display_name":"Zubair Afzal","orcid":"https://orcid.org/0000-0001-7812-2399"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Zubair Afzal","raw_affiliation_strings":["Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053857782","display_name":"Erik M. van Mulligen","orcid":"https://orcid.org/0000-0003-1377-9386"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Erik M van Mulligen","raw_affiliation_strings":["Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005077862","display_name":"Jan A. Kors","orcid":"https://orcid.org/0000-0002-4929-026X"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jan A Kors","raw_affiliation_strings":["Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus University Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076346443"],"corresponding_institution_ids":["https://openalex.org/I2801952686"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":2.8215,"has_fulltext":true,"cited_by_count":136,"citation_normalized_percentile":{"value":0.9125723,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"20","issue":"5","first_page":"876","last_page":"881"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4074000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.4074000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.4009999930858612,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.03420000150799751,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.8965600728988647},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.8006242513656616},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.673923909664154},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6433019638061523},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6075969934463501},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.500995397567749},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32512766122817993},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3226962685585022},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06684538722038269}],"concepts":[{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.8965600728988647},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.8006242513656616},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.673923909664154},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6433019638061523},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6075969934463501},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.500995397567749},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32512766122817993},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3226962685585022},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06684538722038269},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1136/amiajnl-2012-001173","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001173","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/876/17374826/20-5-876.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:23043124","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23043124","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pure.eur.nl:openaire_cris_publications/3917791a-aa06-467c-9afe-be1130698000","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/3917791a-aa06-467c-9afe-be1130698000","pdf_url":"https://pure.eur.nl/ws/files/47539229/RePub-41565-OA.pdf","source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kang, N, Singh, B, Afzal, M, van Mulligen, E & Kors, J 2013, 'Using rule-based natural language processing to improve disease normalization in biomedical text', Journal of the American Medical Informatics Association, vol. 20, no. 5, pp. 876-881. https://doi.org/10.1136/amiajnl-2012-001173","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:eur:oai:repub.eur.nl:41565","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/41565","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"American Medical Informatics Association. Journal, 20(5), 876 - 881","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2842991","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3756254","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:repub.eur.nl:41565","is_oa":true,"landing_page_url":"http://repub.eur.nl/pub/41565","pdf_url":null,"source":{"id":"https://openalex.org/S4306400997","display_name":"RePub (Erasmus University, Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"American Medical Informatics Association. Journal vol. 20 no. 5, pp. 876-881","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2012-001173","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001173","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/876/17374826/20-5-876.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8100000023841858,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1876684263","display_name":"Collaborative Annotation of a Large Biomedical Corpus","funder_award_id":"231727","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129038679.pdf","grobid_xml":"https://content.openalex.org/works/W2129038679.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W107258648","https://openalex.org/W819451571","https://openalex.org/W1034019924","https://openalex.org/W1527927437","https://openalex.org/W1550258693","https://openalex.org/W1970967239","https://openalex.org/W1973646872","https://openalex.org/W1991154713","https://openalex.org/W1991747826","https://openalex.org/W2005763238","https://openalex.org/W2022886122","https://openalex.org/W2023839984","https://openalex.org/W2031647041","https://openalex.org/W2032566933","https://openalex.org/W2039612385","https://openalex.org/W2040998119","https://openalex.org/W2061166439","https://openalex.org/W2074640468","https://openalex.org/W2096797897","https://openalex.org/W2100627415","https://openalex.org/W2101265630","https://openalex.org/W2101548835","https://openalex.org/W2101819947","https://openalex.org/W2106797966","https://openalex.org/W2107580398","https://openalex.org/W2109252435","https://openalex.org/W2116040937","https://openalex.org/W2121802207","https://openalex.org/W2121893605","https://openalex.org/W2123439964","https://openalex.org/W2126276057","https://openalex.org/W2129113459","https://openalex.org/W2129833455","https://openalex.org/W2134488721","https://openalex.org/W2141869602","https://openalex.org/W2142741334","https://openalex.org/W2142786899","https://openalex.org/W2159070430","https://openalex.org/W2159583324","https://openalex.org/W2164881856","https://openalex.org/W2168041406","https://openalex.org/W2178441628","https://openalex.org/W2510384806","https://openalex.org/W2522519459","https://openalex.org/W3152413195","https://openalex.org/W4320800138","https://openalex.org/W4399410532"],"related_works":["https://openalex.org/W2793132289","https://openalex.org/W3005759282","https://openalex.org/W2078793151","https://openalex.org/W3128216712","https://openalex.org/W3017222382","https://openalex.org/W3136915866","https://openalex.org/W4390279576","https://openalex.org/W2886890203","https://openalex.org/W4313535650","https://openalex.org/W2287770975"],"abstract_inverted_index":{"BACKGROUND":[0],"AND":[1],"OBJECTIVE:":[2],"In":[3,46],"order":[4],"for":[5,97,114,133,141,163,171,191,204,234],"computers":[6],"to":[7,20,27,61,159,167,182,187,244],"extract":[8],"useful":[9],"information":[10,32],"from":[11],"unstructured":[12],"text,":[13],"a":[14,25,90],"concept":[15,37,63,73,115,142,172,192,228,235],"normalization":[16,38,74,208,229],"system":[17,105],"is":[18,218,240],"needed":[19],"link":[21],"relevant":[22],"concepts":[23],"in":[24,40,224],"text":[26],"sources":[28],"that":[29],"contain":[30],"further":[31,180],"about":[33],"the":[34,41,51,68,80,87,104,110,120,146,149,152,199,205],"concept.":[35],"Popular":[36],"tools":[39],"biomedical":[42,72],"field":[43],"are":[44],"dictionary-based.":[45],"this":[47],"study":[48],"we":[49],"investigate":[50],"usefulness":[52],"of":[53,70,89,103,109,128,148,154,202,209],"natural":[54],"language":[55],"processing":[56],"(NLP)":[57],"as":[58],"an":[59],"adjunct":[60],"dictionary-based":[62],"normalization.":[64],"METHODS:":[65],"We":[66,196],"compared":[67],"performance":[69],"two":[71],"systems,":[75],"MetaMap":[76,123,155,212],"and":[77,85,99,113,124,130,137,139,156,161,166,169,184,186,189,207,213,220],"Peregrine,":[78],"on":[79],"Arizona":[81],"Disease":[82],"Corpus,":[83],"with":[84,107,211,226],"without":[86],"use":[88,233],"rule-based":[91],"NLP":[92,121,150,203,216],"module.":[93],"Performance":[94],"was":[95],"assessed":[96],"exact":[98,134],"inexact":[100,176],"boundary":[101,135,164,177],"matching":[102],"annotations":[106],"those":[108],"gold":[111],"standard":[112],"identifier":[116,143,173,193],"matching.":[117,144,174,194],"RESULTS:":[118],"Without":[119],"module,":[122,151],"Peregrine":[125,157],"attained":[126],"F-scores":[127,153],"61.0%":[129],"63.9%,":[131],"respectively,":[132],"matching,":[136,165,178],"55.1%":[138],"56.9%":[140],"With":[145],"aid":[147],"improved":[158],"73.3%":[160,190],"78.0%":[162],"66.2%":[168],"69.8%":[170],"For":[175],"performances":[179],"increased":[181],"85.5%":[183],"85.4%,":[185],"73.6%":[188],"CONCLUSIONS:":[195],"have":[197],"shown":[198],"added":[200],"value":[201],"recognition":[206],"diseases":[210],"Peregrine.":[214],"The":[215],"module":[217],"general":[219],"can":[221],"be":[222,245],"applied":[223],"combination":[225],"any":[227],"system.":[230],"Whether":[231],"its":[232],"types":[236],"other":[237],"than":[238],"disease":[239],"equally":[241],"advantageous":[242],"remains":[243],"investigated.":[246]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":21},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":3}],"updated_date":"2026-05-13T08:25:38.343686","created_date":"2025-10-10T00:00:00"}
