{"id":"https://openalex.org/W23729838","doi":"https://doi.org/10.1136/amiajnl-2012-001168","title":"An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer","display_name":"An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer","publication_year":2012,"publication_date":"2012-09-12","ids":{"openalex":"https://openalex.org/W23729838","doi":"https://doi.org/10.1136/amiajnl-2012-001168","mag":"23729838","pmid":"https://pubmed.ncbi.nlm.nih.gov/22967703"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2012-001168","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001168","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/4/659/17374550/20-4-659.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/20/4/659/17374550/20-4-659.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038541150","display_name":"Zhenshu Wen","orcid":"https://orcid.org/0000-0002-2083-6396"},"institutions":[{"id":"https://openalex.org/I119045251","display_name":"Huaqiao University","ror":"https://ror.org/03frdh605","country_code":"CN","type":"education","lineage":["https://openalex.org/I119045251"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenshu Wen","raw_affiliation_strings":["Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","School of Mathematical Sciences, Huaqiao University, Quanzhou, China","School of Mathematical Sciences, South China University of Technology, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"raw_affiliation_string":"School of Mathematical Sciences, Huaqiao University, Quanzhou, China","institution_ids":["https://openalex.org/I119045251"]},{"raw_affiliation_string":"School of Mathematical Sciences, South China University of Technology, Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109218292","display_name":"Zhi-Ping Liu","orcid":"https://orcid.org/0000-0002-2437-3536"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-Ping Liu","raw_affiliation_strings":["Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","School of Mathematical Sciences, South China University of Technology, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"raw_affiliation_string":"School of Mathematical Sciences, South China University of Technology, Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101651858","display_name":"Zhengrong Liu","orcid":"https://orcid.org/0000-0001-9709-0425"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengrong Liu","raw_affiliation_strings":["Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","School of Mathematical Sciences, South China University of Technology, Guangzhou, China","School of Mathematical Sciences, South China University of technology, GuangZhou,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]},{"raw_affiliation_string":"School of Mathematical Sciences, South China University of Technology, Guangzhou, China","institution_ids":["https://openalex.org/I90610280"]},{"raw_affiliation_string":"School of Mathematical Sciences, South China University of technology, GuangZhou,China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456229","display_name":"Yan Zhang","orcid":"https://orcid.org/0000-0002-3357-5121"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Zhang","raw_affiliation_strings":["Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012283696","display_name":"Luonan Chen","orcid":"https://orcid.org/0000-0002-3960-0068"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Luonan Chen","raw_affiliation_strings":["Institute of Industrial Science, University of Tokyo, Tokyo, Japan","Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Industrial Science, University of Tokyo, Tokyo, Japan","institution_ids":[]},{"raw_affiliation_string":"Key Laboratory of Systems Biology, SIBS-Novo Nordisk Translational Research Centre for PreDiabetes, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5012283696"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106477"],"apc_list":{"value":4332,"currency":"USD","value_usd":4332},"apc_paid":null,"fwci":4.305,"has_fulltext":false,"cited_by_count":65,"citation_normalized_percentile":{"value":0.9532847,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"4","first_page":"659","last_page":"667"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7588000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7588000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.05380000174045563,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.028599999845027924,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6609346866607666},{"id":"https://openalex.org/keywords/casual","display_name":"Casual","score":0.518805205821991},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49326270818710327},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.48670580983161926},{"id":"https://openalex.org/keywords/complex-disease","display_name":"Complex disease","score":0.46786072850227356},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.46242469549179077},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4501304030418396},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4323955178260803},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4074086844921112},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4055965542793274},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3523353934288025},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35130998492240906},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33190131187438965},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28409647941589355},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2721550762653351},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17145979404449463},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1075248122215271}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6609346866607666},{"id":"https://openalex.org/C2781426162","wikidata":"https://www.wikidata.org/wiki/Q2275793","display_name":"Casual","level":2,"score":0.518805205821991},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49326270818710327},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.48670580983161926},{"id":"https://openalex.org/C3018605307","wikidata":"https://www.wikidata.org/wiki/Q200779","display_name":"Complex disease","level":3,"score":0.46786072850227356},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.46242469549179077},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4501304030418396},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4323955178260803},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4074086844921112},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4055965542793274},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3523353934288025},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35130998492240906},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33190131187438965},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28409647941589355},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2721550762653351},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17145979404449463},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1075248122215271},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2012-001168","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001168","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/4/659/17374550/20-4-659.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:22967703","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22967703","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3721155","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3721155","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2012-001168","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001168","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/4/659/17374550/20-4-659.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5799999833106995,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W23729838.pdf"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W408793434","https://openalex.org/W633291512","https://openalex.org/W1518876876","https://openalex.org/W1605737416","https://openalex.org/W1778696825","https://openalex.org/W1968667083","https://openalex.org/W1978181230","https://openalex.org/W1994798484","https://openalex.org/W1997555104","https://openalex.org/W1998977949","https://openalex.org/W1999119052","https://openalex.org/W1999895438","https://openalex.org/W2001476660","https://openalex.org/W2002821487","https://openalex.org/W2011785751","https://openalex.org/W2015631955","https://openalex.org/W2017419240","https://openalex.org/W2027212435","https://openalex.org/W2034099804","https://openalex.org/W2035471593","https://openalex.org/W2047031939","https://openalex.org/W2050245934","https://openalex.org/W2060749612","https://openalex.org/W2061098253","https://openalex.org/W2063928888","https://openalex.org/W2075376076","https://openalex.org/W2084833542","https://openalex.org/W2085289502","https://openalex.org/W2087167584","https://openalex.org/W2088481746","https://openalex.org/W2090175366","https://openalex.org/W2093847914","https://openalex.org/W2096061159","https://openalex.org/W2097520363","https://openalex.org/W2101170994","https://openalex.org/W2102140136","https://openalex.org/W2106603449","https://openalex.org/W2109363337","https://openalex.org/W2109555487","https://openalex.org/W2110095004","https://openalex.org/W2117007075","https://openalex.org/W2117692326","https://openalex.org/W2118668725","https://openalex.org/W2121226101","https://openalex.org/W2122901422","https://openalex.org/W2124166542","https://openalex.org/W2124954099","https://openalex.org/W2129987113","https://openalex.org/W2130410032","https://openalex.org/W2134510309","https://openalex.org/W2135056923","https://openalex.org/W2136535428","https://openalex.org/W2139694094","https://openalex.org/W2147246240","https://openalex.org/W2154595259","https://openalex.org/W2155102185","https://openalex.org/W2155723007","https://openalex.org/W2156070536","https://openalex.org/W2163125553","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2166186613","https://openalex.org/W2167190345","https://openalex.org/W2167874269","https://openalex.org/W2168775836","https://openalex.org/W2170428365","https://openalex.org/W2171322586","https://openalex.org/W2206542436","https://openalex.org/W2502908839","https://openalex.org/W2916767477","https://openalex.org/W4213257593","https://openalex.org/W4238448376","https://openalex.org/W4248974836"],"related_works":["https://openalex.org/W1005754617","https://openalex.org/W756683672","https://openalex.org/W2979523788","https://openalex.org/W2014044877","https://openalex.org/W3141514971","https://openalex.org/W2364587441","https://openalex.org/W2789736974","https://openalex.org/W2271855253","https://openalex.org/W2987802490","https://openalex.org/W4294707127"],"abstract_inverted_index":{"BACKGROUND:":[0],"Many":[1],"methods":[2],"have":[3],"been":[4],"developed":[5,80],"to":[6,26,55,64,85,137,187,205,227,248,262],"identify":[7,86],"disease":[8,73],"genes":[9,222,239],"and":[10,72,105,126,141,169,191,200,242,269],"further":[11],"module":[12,89,151],"biomarkers":[13,90,152],"of":[14,40,45,91,114,172,189,221,231,240,265],"complex":[15,92,267],"diseases":[16,93,268],"based":[17],"on":[18,47],"gene":[19,32,48,102,161],"expression":[20,33,49,103,162],"data.":[21],"It":[22],"is":[23],"generally":[24],"difficult":[25],"distinguish":[27],"whether":[28],"the":[29,38,53,66,112,170,173,181,192,228,263,270],"variations":[30],"in":[31,128],"are":[34,184,203],"causative":[35],"or":[36,252],"merely":[37],"effect":[39],"a":[41,81,117,210],"disease.":[42],"The":[43],"limitation":[44],"relying":[46],"data":[50,63],"alone":[51],"highlights":[52],"need":[54],"develop":[56,249],"new":[57],"approaches":[58],"that":[59,146,180,217,243],"can":[60,122,147,244,258],"explore":[61],"various":[62],"reflect":[65],"casual":[67],"relationship":[68],"between":[69],"network":[70,144],"modules":[71,115,145,183],"traits.":[74],"METHODS:":[75],"In":[76],"this":[77],"work,":[78],"we":[79,133,215],"novel":[82],"network-based":[83],"approach":[84,136],"putative":[87],"causal":[88,238],"by":[94],"integrating":[95],"heterogeneous":[96],"information,":[97],"for":[98,153],"example,":[99],"epigenomic":[100],"data,":[101,104],"protein-protein":[106],"interaction":[107],"network.":[108],"We":[109],"first":[110],"formulated":[111],"identification":[113],"as":[116,149,196,237],"mathematical":[118],"programming":[119],"problem,":[120],"which":[121,234],"be":[123,246,260],"solved":[124],"efficiently":[125],"effectively":[127],"an":[129],"accurate":[130],"manner.":[131],"Then,":[132],"applied":[134],"our":[135],"colorectal":[138],"cancer":[139],"(CRC)":[140],"identified":[142,182],"several":[143],"serve":[148],"potential":[150],"characterizing":[154],"CRC.":[155,206],"Further":[156],"validations":[157],"using":[158],"three":[159],"additional":[160],"datasets":[163],"verified":[164],"their":[165],"candidate":[166],"biomarker":[167],"properties":[168],"effectiveness":[171],"method.":[174],"Functional":[175],"enrichment":[176],"analysis":[177],"also":[178,245],"revealed":[179],"strongly":[185],"related":[186],"hallmarks":[188],"cancer,":[190],"enriched":[193],"functions,":[194],"such":[195],"inflammatory":[197],"response,":[198],"receptor":[199],"signaling":[201],"pathways,":[202],"specific":[204],"RESULTS:":[207],"Through":[208],"constructing":[209],"transcription":[211],"factor":[212],"(TF)-module":[213],"network,":[214],"found":[216],"aberrant":[218],"DNA":[219],"methylation":[220],"encoding":[223],"TF":[224],"considerably":[225],"contributes":[226],"activity":[229],"change":[230],"some":[232],"genes,":[233],"may":[235],"function":[236],"CRC,":[241],"exploited":[247],"efficient":[250],"therapies":[251],"effective":[253],"drugs.":[254],"CONCLUSION:":[255],"Our":[256],"method":[257],"potentially":[259],"extended":[261],"study":[264],"other":[266],"multiclassification":[271],"problem.":[272]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":8},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
