{"id":"https://openalex.org/W1913912210","doi":"https://doi.org/10.1136/amiajnl-2012-001159","title":"A corpus-based approach for automated LOINC mapping","display_name":"A corpus-based approach for automated LOINC mapping","publication_year":2013,"publication_date":"2013-05-16","ids":{"openalex":"https://openalex.org/W1913912210","doi":"https://doi.org/10.1136/amiajnl-2012-001159","mag":"1913912210","pmid":"https://pubmed.ncbi.nlm.nih.gov/23676247"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2012-001159","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001159","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/1/64/6036540/21-1-64.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/21/1/64/6036540/21-1-64.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084829634","display_name":"Mustafa Fidahussein","orcid":null},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mustafa Fidahussein","raw_affiliation_strings":["Regenstrief Institute, Inc, Indianapolis, Indiana, USA","Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Regenstrief Institute, Inc, Indianapolis, Indiana, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045642230","display_name":"Daniel J. Vreeman","orcid":"https://orcid.org/0000-0001-5119-6531"},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel J Vreeman","raw_affiliation_strings":["Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA","Regenstrief Institute, Inc, Indianapolis, Indiana, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine, Indiana University School of Medicine, Indianapolis, Indiana, USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Regenstrief Institute, Inc, Indianapolis, Indiana, USA","institution_ids":["https://openalex.org/I1324682000"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5084829634"],"corresponding_institution_ids":["https://openalex.org/I1324682000","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":0.4129,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.61528937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"64","last_page":"72"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.930400013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.930400013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.01209999993443489,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.00800000037997961,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.9024481177330017},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7646658420562744},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6318201422691345},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5608052015304565},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4602232575416565},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13573294878005981}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.9024481177330017},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7646658420562744},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6318201422691345},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5608052015304565},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4602232575416565},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13573294878005981}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1136/amiajnl-2012-001159","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001159","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/1/64/6036540/21-1-64.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:23676247","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23676247","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3912728","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3912728","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/8978","is_oa":false,"landing_page_url":"https://hdl.handle.net/1805/8978","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:scholarworks.iupui.edu:1805/8978","is_oa":false,"landing_page_url":"http://hdl.handle.net/1805/8978","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2012-001159","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-001159","pdf_url":"https://academic.oup.com/jamia/article-pdf/21/1/64/6036540/21-1-64.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1802899781","display_name":null,"funder_award_id":"T15LM007117","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6410687504","display_name":null,"funder_award_id":"HHSN276200800006C","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G773620261","display_name":null,"funder_award_id":"5T15 LM007117-14","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W1913912210.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W26591655","https://openalex.org/W81435224","https://openalex.org/W92322189","https://openalex.org/W119710289","https://openalex.org/W138968130","https://openalex.org/W202643521","https://openalex.org/W1511955772","https://openalex.org/W1515023511","https://openalex.org/W1527781663","https://openalex.org/W1568609675","https://openalex.org/W1956559956","https://openalex.org/W1994398170","https://openalex.org/W2011977909","https://openalex.org/W2021325618","https://openalex.org/W2039612385","https://openalex.org/W2054831782","https://openalex.org/W2056857827","https://openalex.org/W2072544305","https://openalex.org/W2075147641","https://openalex.org/W2096175520","https://openalex.org/W2104026855","https://openalex.org/W2104198823","https://openalex.org/W2106365165","https://openalex.org/W2121267030","https://openalex.org/W2128635794","https://openalex.org/W2135352255","https://openalex.org/W2146089916","https://openalex.org/W2163397734","https://openalex.org/W2165748167","https://openalex.org/W2183230901","https://openalex.org/W2194805174","https://openalex.org/W2230349106","https://openalex.org/W2406510749","https://openalex.org/W4250877149","https://openalex.org/W4299891032"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W4378651134","https://openalex.org/W4252684102","https://openalex.org/W2352307597","https://openalex.org/W1979633005","https://openalex.org/W2163724607","https://openalex.org/W3135403405","https://openalex.org/W2608983118","https://openalex.org/W3204019825"],"abstract_inverted_index":{"OBJECTIVE:":[0],"To":[1],"determine":[2],"whether":[3],"the":[4,57,95,110,124,148,154,188,244],"knowledge":[5,215],"contained":[6],"in":[7,243],"a":[8,73,180,204,231],"rich":[9,205],"corpus":[10,206],"of":[11,97,116,139,166,183,196,207,257],"local":[12,29,140,167,197,208],"terms":[13,30,103,146,209,220],"mapped":[14,210],"to":[15,26,39,211,254],"LOINC":[16,126,156,190,212],"(Logical":[17],"Observation":[18],"Identifiers":[19],"Names":[20],"and":[21,56,82,89,121,132,134,137,162,175,247,260],"Codes)":[22],"could":[23],"be":[24],"leveraged":[25],"help":[27,218,253],"map":[28,219],"from":[31,104,147,221,240],"other":[32,222],"institutions.":[33,107,223],"METHODS:":[34],"We":[35,92],"developed":[36,230],"two":[37],"models":[38,69,99],"test":[40,106,150],"our":[41,117],"hypothesis.":[42],"The":[43,68],"first":[44,128,158,192],"based":[45,59],"on":[46,60,100,237],"supervised":[47],"machine":[48],"learning":[49],"was":[50,63,78,172],"created":[51,64],"using":[52,65],"Apache's":[53,66],"OpenNLP":[54],"Maxent":[55,120,152,185],"second":[58],"information":[61,264],"retrieval":[62],"Lucene.":[67],"were":[70],"validated":[71],"by":[72],"random":[74],"subsampling":[75],"method":[76],"that":[77,83,203,216,235],"repeated":[79],"20":[80,111],"times":[81],"used":[84,113],"80/20":[85,118],"splits":[86,119],"for":[87,114,129,159,193],"training":[88],"testing,":[90],"respectively.":[91,142],"also":[93],"evaluated":[94],"performance":[96,171],"these":[98],"all":[101,144],"laboratory":[102,145],"three":[105,149],"RESULTS:":[108],"For":[109,143],"iterations":[112],"validation":[115],"Lucene":[122],"ranked":[123,153,187],"correct":[125,155,189],"code":[127,157,191],"between":[130,135,160,173],"70.5%":[131],"71.4%":[133],"63.7%":[136],"65.0%":[138],"terms,":[141,168],"institutions":[151],"73.5%":[161],"84.6%":[163],"(mean":[164,177],"78.9%)":[165],"whereas":[169],"Lucene's":[170],"66.5%":[174],"76.6%":[176],"71.9%).":[178],"Using":[179,224],"cut-off":[181],"score":[182],"0.46":[184],"always":[186],"over":[194],"57%":[195],"terms.":[198],"CONCLUSIONS:":[199],"This":[200],"study":[201],"showed":[202],"contains":[213],"collective":[214],"can":[217,252],"freely":[225],"available":[226],"software":[227],"tools,":[228],"we":[229],"data-driven":[232],"automated":[233,249],"approach":[234],"operates":[236],"term":[238],"descriptions":[239],"existing":[241],"mappings":[242],"corpus.":[245],"Accurate":[246],"efficient":[248],"mapping":[250],"methods":[251],"accelerate":[255],"adoption":[256],"vocabulary":[258],"standards":[259],"promote":[261],"widespread":[262],"health":[263],"exchange.":[265]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
