{"id":"https://openalex.org/W2163738899","doi":"https://doi.org/10.1136/amiajnl-2012-000928","title":"Identifying primary and recurrent cancers using a SAS-based natural language processing algorithm","display_name":"Identifying primary and recurrent cancers using a SAS-based natural language processing algorithm","publication_year":2012,"publication_date":"2012-07-21","ids":{"openalex":"https://openalex.org/W2163738899","doi":"https://doi.org/10.1136/amiajnl-2012-000928","mag":"2163738899","pmid":"https://pubmed.ncbi.nlm.nih.gov/22822041"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2012-000928","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-000928","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/2/349/9517272/20-2-349.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/20/2/349/9517272/20-2-349.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079679684","display_name":"Justin A Strauss","orcid":null},"institutions":[{"id":"https://openalex.org/I1343052199","display_name":"Kaiser Permanente","ror":"https://ror.org/00t60zh31","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1343052199"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin A Strauss","raw_affiliation_strings":["Kaiser Permanente Southern California, Research and Evaluation, Pasadena, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kaiser Permanente Southern California, Research and Evaluation, Pasadena, California, USA","institution_ids":["https://openalex.org/I1343052199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024734562","display_name":"Chun Chao","orcid":"https://orcid.org/0000-0002-6072-4954"},"institutions":[{"id":"https://openalex.org/I1343052199","display_name":"Kaiser Permanente","ror":"https://ror.org/00t60zh31","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1343052199"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chun R Chao","raw_affiliation_strings":["Kaiser Permanente Southern California, Research and Evaluation, Pasadena, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kaiser Permanente Southern California, Research and Evaluation, Pasadena, California, USA","institution_ids":["https://openalex.org/I1343052199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062761100","display_name":"Marilyn L. Kwan","orcid":"https://orcid.org/0000-0001-8863-3950"},"institutions":[{"id":"https://openalex.org/I1343052199","display_name":"Kaiser Permanente","ror":"https://ror.org/00t60zh31","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1343052199"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marilyn L Kwan","raw_affiliation_strings":["Kaiser Permanente Northern California, Division of Research, Oakland, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kaiser Permanente Northern California, Division of Research, Oakland, California, USA","institution_ids":["https://openalex.org/I1343052199"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061249790","display_name":"Syed A. Ahmed","orcid":"https://orcid.org/0009-0004-2592-5170"},"institutions":[{"id":"https://openalex.org/I4210113696","display_name":"Kaiser Permanente Riverside Medical Center","ror":"https://ror.org/01wgych27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343052199","https://openalex.org/I4210113696"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Syed A Ahmed","raw_affiliation_strings":["Southern California Permanente Medical Group, Genetic Services, Riverside, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southern California Permanente Medical Group, Genetic Services, Riverside, California, USA","institution_ids":["https://openalex.org/I4210113696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013280766","display_name":"Joanne E. Schottinger","orcid":"https://orcid.org/0000-0002-8276-7672"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joanne E Schottinger","raw_affiliation_strings":["Southern California Permanente Medical Group, Quality and Clinical Analysis, Pasadena, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southern California Permanente Medical Group, Quality and Clinical Analysis, Pasadena, California, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004977265","display_name":"Virginia P. Quinn","orcid":"https://orcid.org/0000-0002-6476-3336"},"institutions":[{"id":"https://openalex.org/I1343052199","display_name":"Kaiser Permanente","ror":"https://ror.org/00t60zh31","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1343052199"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Virginia P Quinn","raw_affiliation_strings":["Kaiser Permanente Southern California, Research and Evaluation, Pasadena, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kaiser Permanente Southern California, Research and Evaluation, Pasadena, California, USA","institution_ids":["https://openalex.org/I1343052199"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004977265"],"corresponding_institution_ids":["https://openalex.org/I1343052199"],"apc_list":{"value":4332,"currency":"USD","value_usd":4332},"apc_paid":{"value":4332,"currency":"USD","value_usd":4332},"fwci":1.476,"has_fulltext":true,"cited_by_count":80,"citation_normalized_percentile":{"value":0.81696637,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"20","issue":"2","first_page":"349","last_page":"355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.18119999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.18119999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13820","display_name":"SAS software applications and methods","score":0.1200999990105629,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12380","display_name":"Authorship Attribution and Profiling","score":0.045499999076128006,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.67742919921875},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5286978483200073},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5040498971939087},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.49100616574287415},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4855603873729706},{"id":"https://openalex.org/keywords/predictive-value","display_name":"Predictive value","score":0.47063136100769043},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.4688618779182434},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45260941982269287},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3986700177192688},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36544784903526306},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35364094376564026},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.32294225692749023},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.24997466802597046},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.16965335607528687},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.08912608027458191}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.67742919921875},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5286978483200073},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5040498971939087},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.49100616574287415},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4855603873729706},{"id":"https://openalex.org/C3019719930","wikidata":"https://www.wikidata.org/wiki/Q3910099","display_name":"Predictive value","level":2,"score":0.47063136100769043},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.4688618779182434},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45260941982269287},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3986700177192688},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36544784903526306},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35364094376564026},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.32294225692749023},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.24997466802597046},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.16965335607528687},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.08912608027458191},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D012008","descriptor_name":"Recurrence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012008","descriptor_name":"Recurrence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012008","descriptor_name":"Recurrence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2012-000928","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-000928","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/2/349/9517272/20-2-349.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:22822041","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22822041","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2930029","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3638182","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2012-000928","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2012-000928","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/2/349/9517272/20-2-349.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4699999988079071,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1793900336","display_name":null,"funder_award_id":"U19/CA 79689","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2143395885","display_name":null,"funder_award_id":"U19CA079689","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4192516795","display_name":null,"funder_award_id":"R01CA136743-01A2","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4735848484","display_name":null,"funder_award_id":"R01 CA136743","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320308849","display_name":"Kaiser Permanente","ror":"https://ror.org/00t60zh31"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332502","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163738899.pdf","grobid_xml":"https://content.openalex.org/works/W2163738899.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W37638913","https://openalex.org/W70674440","https://openalex.org/W137891802","https://openalex.org/W271409215","https://openalex.org/W1501127336","https://openalex.org/W1519798095","https://openalex.org/W1967565781","https://openalex.org/W1978823332","https://openalex.org/W1985297116","https://openalex.org/W1995151442","https://openalex.org/W2021988603","https://openalex.org/W2096252540","https://openalex.org/W2106838048","https://openalex.org/W2109977913","https://openalex.org/W2110866393","https://openalex.org/W2139865360","https://openalex.org/W2159904367","https://openalex.org/W2171409007","https://openalex.org/W2315368648","https://openalex.org/W4300626678"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W1987864620","https://openalex.org/W2417983495","https://openalex.org/W2102662693"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Significant":[1],"limitations":[2],"exist":[3],"in":[4,125,155,173,202],"the":[5,68,102,126],"timely":[6],"and":[7,12,17,24,44,54,62,88,123,128,140,167,190,204,245,250],"complete":[8],"identification":[9],"of":[10,59,70,78,85,105,110,117,121,136,142,161,230],"primary":[11,139],"recurrent":[13,144],"cancers":[14],"for":[15,232],"clinical":[16,60,205,217,249],"epidemiologic":[18,251],"research.":[19,252],"A":[20],"SAS-based":[21,233],"coding,":[22],"extraction,":[23],"nomenclature":[25],"tool":[26],"(SCENT)":[27],"was":[28,73],"developed":[29],"to":[30,42,187,212,247],"address":[31],"this":[32],"problem.":[33],"MATERIALS":[34],"AND":[35],"METHODS:":[36],"SCENT":[37,111,133,183,198,227],"employs":[38],"hierarchical":[39],"classification":[40],"rules":[41],"identify":[43],"extract":[45],"information":[46,192],"from":[47,81,193],"electronic":[48],"pathology":[49,79,194],"reports.":[50],"Reports":[51],"are":[52],"analyzed":[53],"coded":[55],"using":[56,75],"a":[57,82],"dictionary":[58],"concepts":[61],"associated":[63],"SNOMED":[64],"codes.":[65],"To":[66],"assess":[67],"accuracy":[69],"SCENT,":[71],"validation":[72,179],"conducted":[74],"manual":[76],"review":[77],"reports":[80],"random":[83],"sample":[84],"400":[86,89],"breast":[87,127],"prostate":[90,129],"cancer":[91,130,145,175],"patients":[92],"diagnosed":[93],"at":[94],"Kaiser":[95],"Permanente":[96],"Southern":[97],"California.":[98],"Trained":[99],"abstractors":[100],"classified":[101],"malignancy":[103],"status":[104],"each":[106],"report.":[107],"RESULTS:":[108],"Classifications":[109],"were":[112],"highly":[113],"concordant":[114],"with":[115,150,215,222],"those":[116,221],"abstractors,":[118],"achieving":[119],"\u03ba":[120],"0.96":[122],"0.95":[124],"groups,":[131,149],"respectively.":[132],"identified":[134],"51":[135],"54":[137],"new":[138],"60":[141],"61":[143],"cases":[146],"across":[147],"both":[148,174],"only":[151],"three":[152],"false":[153],"positives":[154],"792":[156],"true":[157],"benign":[158],"cases.":[159],"Measures":[160],"sensitivity,":[162],"specificity,":[163],"positive":[164],"predictive":[165,169],"value,":[166],"negative":[168],"value":[170],"exceeded":[171],"94%":[172],"groups.":[176],"DISCUSSION:":[177],"Favorable":[178],"results":[180],"suggest":[181],"that":[182,238],"can":[184,239],"be":[185,210,240],"used":[186,246],"identify,":[188],"extract,":[189],"code":[191],"report":[195],"text.":[196],"Consequently,":[197],"has":[199],"wide":[200],"applicability":[201],"research":[203],"care.":[206],"Further":[207],"assessment":[208],"will":[209],"needed":[211],"validate":[213],"performance":[214],"other":[216],"text":[218],"sources,":[219],"particularly":[220],"greater":[223],"linguistic":[224],"variability.":[225],"CONCLUSION:":[226],"is":[228],"proof":[229],"concept":[231],"natural":[234],"language":[235],"processing":[236],"applications":[237],"easily":[241],"shared":[242],"between":[243],"institutions":[244],"support":[248]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
