{"id":"https://openalex.org/W243734986","doi":"https://doi.org/10.1136/amiajnl-2011-000770","title":"A rule based solution to co-reference resolution in clinical text","display_name":"A rule based solution to co-reference resolution in clinical text","publication_year":2012,"publication_date":"2012-10-12","ids":{"openalex":"https://openalex.org/W243734986","doi":"https://doi.org/10.1136/amiajnl-2011-000770","mag":"243734986","pmid":"https://pubmed.ncbi.nlm.nih.gov/23059732"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2011-000770","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000770","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/891/9517584/20-5-891.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/jamia/article-pdf/20/5/891/9517584/20-5-891.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100400329","display_name":"Ping Chen","orcid":"https://orcid.org/0000-0003-3789-7686"},"institutions":[{"id":"https://openalex.org/I16277215","display_name":"University of Houston - Downtown","ror":"https://ror.org/05mj6fy81","country_code":"US","type":"education","lineage":["https://openalex.org/I16277215"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ping Chen","raw_affiliation_strings":["Department of Computer and Mathematical Sciences, University of Houston-Downtown, Houston, Texas, USA","Department of Computer and Mathematical Sciences, University of Houston\u2013Downtown, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Mathematical Sciences, University of Houston-Downtown, Houston, Texas, USA","institution_ids":["https://openalex.org/I16277215"]},{"raw_affiliation_string":"Department of Computer and Mathematical Sciences, University of Houston\u2013Downtown, Houston, Texas, USA","institution_ids":["https://openalex.org/I16277215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005286249","display_name":"David Hinote","orcid":null},"institutions":[{"id":"https://openalex.org/I16277215","display_name":"University of Houston - Downtown","ror":"https://ror.org/05mj6fy81","country_code":"US","type":"education","lineage":["https://openalex.org/I16277215"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Hinote","raw_affiliation_strings":["Department of Computer and Mathematical Sciences, University of Houston\u2013Downtown, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Mathematical Sciences, University of Houston\u2013Downtown, Houston, Texas, USA","institution_ids":["https://openalex.org/I16277215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100342996","display_name":"Guoqing Chen","orcid":"https://orcid.org/0000-0001-7840-5719"},"institutions":[{"id":"https://openalex.org/I181547552","display_name":"Baylor College of Medicine","ror":"https://ror.org/02pttbw34","country_code":"US","type":"education","lineage":["https://openalex.org/I181547552","https://openalex.org/I2801539370"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guoqing Chen","raw_affiliation_strings":["VA HSR&D Center of Excellence (152), Baylor College of Medicine, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA HSR&D Center of Excellence (152), Baylor College of Medicine, Houston, Texas, USA","institution_ids":["https://openalex.org/I181547552"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100400329"],"corresponding_institution_ids":["https://openalex.org/I16277215"],"apc_list":{"value":4332,"currency":"USD","value_usd":4332},"apc_paid":{"value":4332,"currency":"USD","value_usd":4332},"fwci":0.369,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.57139993,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"20","issue":"5","first_page":"891","last_page":"897"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7814000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7814000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.14730000495910645,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13629","display_name":"Text Readability and Simplification","score":0.012799999676644802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8037066459655762},{"id":"https://openalex.org/keywords/referent","display_name":"Referent","score":0.7565281391143799},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.7176111936569214},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6661593914031982},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5884605646133423},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5439891219139099},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5202611684799194},{"id":"https://openalex.org/keywords/rule-based-system","display_name":"Rule-based system","score":0.4628125727176666},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.44925814867019653},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3309142589569092}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8037066459655762},{"id":"https://openalex.org/C2777096784","wikidata":"https://www.wikidata.org/wiki/Q3826351","display_name":"Referent","level":2,"score":0.7565281391143799},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.7176111936569214},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6661593914031982},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5884605646133423},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5439891219139099},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5202611684799194},{"id":"https://openalex.org/C149271511","wikidata":"https://www.wikidata.org/wiki/Q1417149","display_name":"Rule-based system","level":2,"score":0.4628125727176666},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.44925814867019653},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3309142589569092},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2011-000770","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000770","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/891/9517584/20-5-891.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:23059732","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23059732","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":"Comparative Study"},{"id":"pmh:oai:europepmc.org:2842989","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3756251","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2011-000770","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000770","pdf_url":"https://academic.oup.com/jamia/article-pdf/20/5/891/9517584/20-5-891.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6899999976158142}],"awards":[{"id":"https://openalex.org/G1206153511","display_name":null,"funder_award_id":"U54-LM008748","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4257107804","display_name":null,"funder_award_id":"R13LM011411","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8752400644","display_name":"REU Site: Research Experiences in Algorithm Design and Analysis for Students in Undergraduate Institutions","funder_award_id":"0851984","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306110","display_name":"U.S. Department of Homeland Security","ror":"https://ror.org/00jyr0d86"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W243734986.pdf","grobid_xml":"https://content.openalex.org/works/W243734986.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1485446140","https://openalex.org/W1490379749","https://openalex.org/W1495981708","https://openalex.org/W1965693266","https://openalex.org/W1978117656","https://openalex.org/W2038721957","https://openalex.org/W2074153466","https://openalex.org/W2098345921","https://openalex.org/W2141848945","https://openalex.org/W2607849328","https://openalex.org/W4235505822"],"related_works":["https://openalex.org/W2143938773","https://openalex.org/W2366781357","https://openalex.org/W2493878481","https://openalex.org/W1968508462","https://openalex.org/W2167817468","https://openalex.org/W2087916438","https://openalex.org/W2115473420","https://openalex.org/W4231483347","https://openalex.org/W3010781847","https://openalex.org/W2155088048"],"abstract_inverted_index":{"OBJECTIVE:":[0],"To":[1],"build":[2,78],"an":[3],"effective":[4],"co-reference":[5,35,59,108,163],"resolution":[6,36,100,109,164],"system":[7,69,123,134],"tailored":[8],"to":[9,70,76,85,90,113,157],"the":[10,23,49,82,99,117,127,130,167],"biomedical":[11,169],"domain.":[12,170],"METHODS:":[13],"Experimental":[14],"materials":[15],"used":[16],"in":[17,37,45,53,161],"this":[18,162],"study":[19],"were":[20],"provided":[21],"by":[22,58],"2011":[24,31],"i2b2":[25,32],"Natural":[26],"Language":[27],"Processing":[28],"Challenge.":[29],"The":[30,106],"challenge":[33],"involves":[34],"medical":[38,141],"documents.":[39],"Concept":[40],"mentions":[41,50],"have":[42],"been":[43],"annotated":[44],"clinical":[46],"texts,":[47],"and":[48,96],"that":[51],"co-refer":[52],"each":[54],"document":[55],"are":[56,63,111],"linked":[57],"chains.":[60],"Normally,":[61],"there":[62],"two":[64],"ways":[65],"of":[66,116,129,150],"constructing":[67],"a":[68,154],"automatically":[71,92],"discoverco-referent":[72],"links.":[73,132],"One":[74],"is":[75,84,153],"manually":[77],"rules":[79,146],"forco-reference":[80],"resolution;":[81],"other":[83],"use":[86],"machine":[87],"learning":[88],"systems":[89,110],"learn":[91],"from":[93],"training":[94,151],"datasets":[95],"then":[97],"perform":[98],"task":[101,165],"on":[102,139,148],"testing":[103],"datasets.":[104,142],"RESULTS:":[105],"existing":[107],"able":[112],"find":[114],"some":[115],"co-referent":[118,131],"links;":[119],"our":[120],"rule":[121],"based":[122,147],"performs":[124],"well,":[125],"finding":[126],"majority":[128],"Our":[133],"achieved":[135],"89.6%":[136],"overall":[137],"performance":[138,160],"multiple":[140],"CONCLUSIONS:":[143],"Manually":[144],"crafted":[145],"observation":[149],"data":[152],"valid":[155],"way":[156],"accomplish":[158],"high":[159],"for":[166],"critical":[168]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
