{"id":"https://openalex.org/W2099973138","doi":"https://doi.org/10.1136/amiajnl-2011-000343","title":"Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured in<i>JAMIA</i>","display_name":"Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured in<i>JAMIA</i>","publication_year":2011,"publication_date":"2011-06-14","ids":{"openalex":"https://openalex.org/W2099973138","doi":"https://doi.org/10.1136/amiajnl-2011-000343","mag":"2099973138","pmid":"https://pubmed.ncbi.nlm.nih.gov/21672904"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2011-000343","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000343","pdf_url":"https://academic.oup.com/jamia/article-pdf/18/4/352/5911056/18-4-352.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/18/4/352/5911056/18-4-352.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036068985","display_name":"Atul J. Butte","orcid":"https://orcid.org/0000-0002-7433-2740"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I1334016132","display_name":"Lucile Packard Children's Hospital","ror":"https://ror.org/05a25vm86","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334016132","https://openalex.org/I4210137306","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Atul J Butte","raw_affiliation_strings":["Division of Systems Medicine, Department of Pediatrics, Stanford University School of Medicine, Stanford, California, USA","Lucile Packard Children's Hospital, Palo Alto, California, USA"],"affiliations":[{"raw_affiliation_string":"Division of Systems Medicine, Department of Pediatrics, Stanford University School of Medicine, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Lucile Packard Children's Hospital, Palo Alto, California, USA","institution_ids":["https://openalex.org/I1334016132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nigam H Shah","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University School of Medicine, Stanford, California, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University School of Medicine, Stanford, California, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5036068985"],"corresponding_institution_ids":["https://openalex.org/I1334016132","https://openalex.org/I97018004"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":1.25785734,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.7726918,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"4","first_page":"352","last_page":"353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/blueprint","display_name":"Blueprint","score":0.616446852684021},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5816512107849121},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5465847849845886},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5073832869529724},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4768691956996918},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4386313855648041},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4311862885951996},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4049355089664459},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3751579523086548},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36224934458732605},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32511258125305176},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31754449009895325},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3108040690422058},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16518715023994446},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15826666355133057}],"concepts":[{"id":"https://openalex.org/C155911762","wikidata":"https://www.wikidata.org/wiki/Q422321","display_name":"Blueprint","level":2,"score":0.616446852684021},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5816512107849121},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5465847849845886},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5073832869529724},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4768691956996918},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4386313855648041},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4311862885951996},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4049355089664459},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3751579523086548},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36224934458732605},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32511258125305176},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31754449009895325},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3108040690422058},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16518715023994446},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15826666355133057},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1136/amiajnl-2011-000343","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000343","pdf_url":"https://academic.oup.com/jamia/article-pdf/18/4/352/5911056/18-4-352.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:21672904","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21672904","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:2142329","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3128419","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3128419","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3128419","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Am Med Inform Assoc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2011-000343","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000343","pdf_url":"https://academic.oup.com/jamia/article-pdf/18/4/352/5911056/18-4-352.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099973138.pdf","grobid_xml":"https://content.openalex.org/works/W2099973138.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1516041857","https://openalex.org/W1529106245","https://openalex.org/W1912831792","https://openalex.org/W1970156673","https://openalex.org/W1980991473","https://openalex.org/W1998466008","https://openalex.org/W2012254260","https://openalex.org/W2057461700","https://openalex.org/W2078586457","https://openalex.org/W2100471807","https://openalex.org/W2106108075","https://openalex.org/W2107720458","https://openalex.org/W2113711528","https://openalex.org/W2124752499","https://openalex.org/W2124785215","https://openalex.org/W2145770068","https://openalex.org/W2154362705","https://openalex.org/W4233315337","https://openalex.org/W4253759977"],"related_works":["https://openalex.org/W4304620183","https://openalex.org/W2384575798","https://openalex.org/W2007211730","https://openalex.org/W1969895229","https://openalex.org/W1979741542","https://openalex.org/W2108497208","https://openalex.org/W4238032041","https://openalex.org/W2000974906","https://openalex.org/W1974120093","https://openalex.org/W2410634280"],"abstract_inverted_index":{"This":[0],"year":[1,59],"marks":[2],"the":[3,7,10,19,98,117,174,212,232],"15th":[4],"anniversary":[5],"of":[6,9,104,106,186,214,222,289],"invention":[8],"gene":[11],"expression":[12],"microarray.":[13],"As":[14],"mRNA":[15,27],"transcripts":[16,51,68],"serve":[17],"as":[18,31,94,96,171],"blueprint":[20],"within":[21,57],"cells":[22],"for":[23,154,164,198],"making":[24],"proteins,":[25],"measuring":[26],"levels":[28],"was":[29],"seen":[30],"an":[32,228],"accurate":[33],"and":[34,40,87,91,100,203,234,253,263,272],"manageable":[35],"way":[36],"to":[37,63,83,124,151,179,201,211,243,277],"investigate":[38],"cell":[39],"tissue":[41],"processes.":[42],"Those":[43],"earliest":[44],"microarrays":[45,76],"in":[46,52,54,71,89,97,128,162,225],"1995":[47,226],"could":[48,240],"measure":[49,64],"48":[50],"parallel":[53],"plants,1":[55],"but":[56,130],"1":[58],"were":[60],"scaled":[61],"up":[62],"more":[65],"than":[66],"1000":[67],"including":[69],"those":[70],"human":[72,85,148],"tissues.":[73],"Today,":[74],"these":[75,132],"are":[77,121,177],"essentially":[78],"commodity":[79],"items,":[80],"commonly":[81],"used":[82,123,178,242],"study":[84],"health":[86],"disease":[88],"hospitals":[90],"academic":[92,250],"institutions,":[93],"well":[95],"biotechnology":[99],"pharmaceutical":[101],"industry.\n\nWhile":[102],"tens":[103],"thousands":[105],"publications":[107],"have":[108,207],"already":[109,122],"been":[110,169,209],"published":[111],"referencing":[112],"microarrays,":[113],"this":[114],"is":[115,194],"just":[116],"start.":[118],"Similar":[119],"arrays":[120],"probe":[125],"genetic":[126],"differences":[127],"DNA,":[129],"even":[131],"will":[133],"soon":[134],"be":[135,152,241],"supplanted":[136],"by":[137],"whole":[138,165],"genome":[139,166,245,251],"sequencing,":[140],"where":[141],"we":[142,176],"can":[143],"expect":[144],"all":[145],"three":[146],"billion":[147],"base":[149],"pairs":[150],"sequenced":[153],"a":[155,195],"few":[156],"thousand":[157],"dollars.":[158],"The":[159,219,265],"exponential":[160],"decrease":[161],"costs":[163],"sequencing":[167,246],"has":[168],"described":[170],"going":[172],"beyond":[173],"decline":[175],"from":[180],"Moore's":[181],"law.2":[182],"These":[183],"enormous":[184],"amounts":[185],"molecular":[187],"data":[188,206],"make":[189],"it":[190],"clear":[191],"that":[192],"there":[193],"pressing":[196],"need":[197],"computational":[199],"methods":[200],"analyze":[202],"interpret":[204],"them.\n\nMolecular":[205],"never":[208],"foreign":[210],"pages":[213],"JAMIA":[215,223],"or":[216],"AMIA":[217,267],"Symposia.":[218],"second":[220],"volume":[221],"back":[224],"contained":[227],"article":[229],"describing":[230],"how":[231],"internet":[233],"newly":[235],"introduced":[236,254],"world":[237],"wide":[238],"web":[239],"facilitate":[244],"efforts":[247],"across":[248],"two":[249],"centers":[252],"concepts":[255],"like":[256],"yeast":[257],"artificial":[258],"chromosomes,":[259],"sequence":[260],"tagged":[261],"sites":[262],"contigs.3":[264],"2002":[266],"Fall":[268],"Symposium":[269],"suggested":[270],"bioinformatics":[271],"medical":[273],"informatics":[274],"\u2026":[275],"\n\nCorrespondence":[276],"Dr":[282],"Atul":[283],"J":[284],"Butte,":[285],"Stanford":[286],"University":[287],"School":[288],"Medicine,":[290],"251":[291],"Campus":[292],"Drive":[293],"MS-5415,":[294],"Room":[295],"X-163,":[296],"Stanford,":[297],"CA":[298],"94305-5415,":[299],"USA;":[300],"abutte{at}stanford.edu":[301]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-02-09T09:26:11.010843","created_date":"2016-06-24T00:00:00"}
