{"id":"https://openalex.org/W2141761043","doi":"https://doi.org/10.1136/amiajnl-2011-000096","title":"Using information mining of the medical literature to improve drug safety","display_name":"Using information mining of the medical literature to improve drug safety","publication_year":2011,"publication_date":"2011-05-06","ids":{"openalex":"https://openalex.org/W2141761043","doi":"https://doi.org/10.1136/amiajnl-2011-000096","mag":"2141761043","pmid":"https://pubmed.ncbi.nlm.nih.gov/21546507"},"language":"en","primary_location":{"id":"doi:10.1136/amiajnl-2011-000096","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000096","pdf_url":"https://academic.oup.com/jamia/article-pdf/18/5/668/5965358/18-5-668.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/jamia/article-pdf/18/5/668/5965358/18-5-668.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077193616","display_name":"Kanaka Shetty","orcid":"https://orcid.org/0000-0003-0974-0948"},"institutions":[{"id":"https://openalex.org/I1309849503","display_name":"RAND Corporation","ror":"https://ror.org/00f2z7n96","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309849503"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kanaka D Shetty","raw_affiliation_strings":["RAND Corporation, Santa Monica, California 90401, USA","Rand Corporation Santa Monica, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RAND Corporation, Santa Monica, California 90401, USA","institution_ids":["https://openalex.org/I1309849503"]},{"raw_affiliation_string":"Rand Corporation Santa Monica, California, USA","institution_ids":["https://openalex.org/I1309849503"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090118237","display_name":"Siddhartha R. Dalal","orcid":"https://orcid.org/0000-0002-8892-4317"},"institutions":[{"id":"https://openalex.org/I1309849503","display_name":"RAND Corporation","ror":"https://ror.org/00f2z7n96","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1309849503"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Siddhartha R Dalal","raw_affiliation_strings":["RAND Corporation, Santa Monica, California, USA","Rand Corporation Santa Monica, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RAND Corporation, Santa Monica, California, USA","institution_ids":["https://openalex.org/I1309849503"]},{"raw_affiliation_string":"Rand Corporation Santa Monica, California, USA","institution_ids":["https://openalex.org/I1309849503"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5090118237"],"corresponding_institution_ids":["https://openalex.org/I1309849503"],"apc_list":{"value":3967,"currency":"USD","value_usd":3967},"apc_paid":null,"fwci":5.9117,"has_fulltext":true,"cited_by_count":85,"citation_normalized_percentile":{"value":0.97626871,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"18","issue":"5","first_page":"668","last_page":"674"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4912547469139099},{"id":"https://openalex.org/keywords/patient-safety","display_name":"Patient safety","score":0.4447910785675049},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4078160524368286},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35142064094543457},{"id":"https://openalex.org/keywords/medical-emergency","display_name":"Medical emergency","score":0.34971728920936584},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3206326365470886},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29624056816101074},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.12686657905578613},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.11870720982551575},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.07033142447471619}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4912547469139099},{"id":"https://openalex.org/C2779328685","wikidata":"https://www.wikidata.org/wiki/Q1475557","display_name":"Patient safety","level":3,"score":0.4447910785675049},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4078160524368286},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35142064094543457},{"id":"https://openalex.org/C545542383","wikidata":"https://www.wikidata.org/wiki/Q2751242","display_name":"Medical emergency","level":1,"score":0.34971728920936584},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3206326365470886},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29624056816101074},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.12686657905578613},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.11870720982551575},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.07033142447471619},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011358","descriptor_name":"Product Surveillance, Postmarketing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011358","descriptor_name":"Product Surveillance, Postmarketing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011358","descriptor_name":"Product Surveillance, Postmarketing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1136/amiajnl-2011-000096","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000096","pdf_url":"https://academic.oup.com/jamia/article-pdf/18/5/668/5965358/18-5-668.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},{"id":"pmid:21546507","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21546507","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association : JAMIA","raw_type":null},{"id":"pmh:oai:europepmc.org:2434151","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3168306","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1136/amiajnl-2011-000096","is_oa":true,"landing_page_url":"https://doi.org/10.1136/amiajnl-2011-000096","pdf_url":"https://academic.oup.com/jamia/article-pdf/18/5/668/5965358/18-5-668.pdf","source":{"id":"https://openalex.org/S129839026","display_name":"Journal of the American Medical Informatics Association","issn_l":"1067-5027","issn":["1067-5027","1527-974X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of the American Medical Informatics Association","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8600000143051147,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320307890","display_name":"RAND Corporation","ror":"https://ror.org/00f2z7n96"},{"id":"https://openalex.org/F4320308668","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141761043.pdf","grobid_xml":"https://content.openalex.org/works/W2141761043.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W164942","https://openalex.org/W147787340","https://openalex.org/W168362576","https://openalex.org/W1544224697","https://openalex.org/W1593442063","https://openalex.org/W1678356000","https://openalex.org/W1824047490","https://openalex.org/W1969879564","https://openalex.org/W1972891674","https://openalex.org/W1973774087","https://openalex.org/W1980917821","https://openalex.org/W1987941106","https://openalex.org/W1988904958","https://openalex.org/W1996073701","https://openalex.org/W1996239270","https://openalex.org/W1996384706","https://openalex.org/W2024233889","https://openalex.org/W2032663748","https://openalex.org/W2045409256","https://openalex.org/W2054126431","https://openalex.org/W2066623165","https://openalex.org/W2067376669","https://openalex.org/W2070469088","https://openalex.org/W2073728088","https://openalex.org/W2074027358","https://openalex.org/W2082348226","https://openalex.org/W2091841926","https://openalex.org/W2099188065","https://openalex.org/W2119862467","https://openalex.org/W2132856714","https://openalex.org/W2150926065","https://openalex.org/W2152881983","https://openalex.org/W2161335655","https://openalex.org/W2166180770","https://openalex.org/W2166183437","https://openalex.org/W2171821819","https://openalex.org/W2952085197"],"related_works":["https://openalex.org/W4206379684","https://openalex.org/W2366105490","https://openalex.org/W2580680567","https://openalex.org/W4285170202","https://openalex.org/W114270996","https://openalex.org/W4249200654","https://openalex.org/W2396656278","https://openalex.org/W3011011760","https://openalex.org/W2407625558","https://openalex.org/W4239132339"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Prescription":[1],"drugs":[2,44,69],"can":[3],"be":[4],"associated":[5],"with":[6,158,241],"adverse":[7],"effects":[8],"(AEs)":[9],"that":[10,108],"are":[11,47],"unrecognized":[12],"despite":[13],"evidence":[14],"in":[15,25,49],"the":[16,50,122,151,168,200,218],"medical":[17],"literature,":[18],"as":[19,139],"shown":[20],"by":[21,167],"rofecoxib's":[22],"late":[23],"recall":[24],"2004.":[26],"We":[27],"assessed":[28],"whether":[29,43,92],"applying":[30],"information":[31],"mining":[32],"to":[33,85,90,120,145,217],"PubMed":[34],"could":[35,243],"reveal":[36],"major":[37],"drug-AE":[38,110,137,142],"associations":[39,111,138,143],"if":[40,63],"articles":[41,88,101,157],"testing":[42],"cause":[45],"AEs":[46,215],"over-represented":[48],"literature.":[51],"DESIGN:":[52],"MEDLINE":[53],"citations":[54],"published":[55,195,208],"between":[56],"1949":[57],"and":[58,70,130,161,177,226,235,242],"September":[59],"2009":[60],"were":[61,102],"retrieved":[62],"they":[64],"mentioned":[65],"one":[66,71],"of":[67,72,113,188,221],"38":[68],"55":[73],"AEs.":[74],"A":[75],"statistical":[76,152,169],"document":[77,153,170],"classifier":[78,154],"(using":[79],"MeSH":[80],"index":[81],"terms)":[82],"was":[83,204],"constructed":[84],"remove":[86],"irrelevant":[87],"unlikely":[89],"test":[91],"a":[93,105],"drug":[94,219,246],"caused":[95],"an":[96],"AE.":[97],"The":[98],"remaining":[99],"relevant":[100,156],"analyzed":[103],"using":[104,116,193,206],"disproportionality":[106],"analysis":[107,236],"identified":[109,155],"(signals":[112],"disproportionate":[114],"reporting)":[115],"step-up":[117],"procedures":[118],"developed":[119],"control":[121],"familywise":[123],"type":[124],"I":[125],"error":[126],"rate.":[127],"MEASUREMENTS:":[128],"Sensitivity":[129],"positive":[131],"predictive":[132],"value":[133],"(PPV)":[134],"for":[135,180],"empirical":[136],"judged":[140],"against":[141],"subject":[144],"FDA":[146,182,191],"warnings.":[147,183,197],"RESULTS:":[148],"In":[149],"testing,":[150],"81%":[159],"sensitivity":[160,176,225],"87%":[162],"PPV.":[163,228],"Using":[164],"data":[165],"filtered":[166],"classifier,":[171],"base-case":[172],"models":[173,185],"showed":[174],"64.9%":[175],"42.4%":[178],"PPV":[179],"detecting":[181],"Base-case":[184],"discovered":[186],"54%":[187],"all":[189],"detected":[190],"warnings":[192],"literature":[194,207,213,233],"before":[196,209],"For":[198],"example,":[199],"rofecoxib-heart":[201],"disease":[202],"association":[203],"evident":[205],"2002.":[210],"Analyses":[211],"incorporating":[212],"mentioning":[214],"common":[216],"class":[220],"interest":[222],"yielded":[223],"71.4%":[224],"40.7%":[227],"CONCLUSIONS:":[229],"Results":[230],"from":[231],"large-scale":[232],"retrieval":[234],"(literature":[237],"mining)":[238],"compared":[239],"favorably":[240],"complement":[244],"current":[245],"safety":[247],"methods.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":15}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
