{"id":"https://openalex.org/W4362603566","doi":"https://doi.org/10.1117/12.2654470","title":"Dmriprep: open-source diffusion MRI quality control framework with graphical user interface","display_name":"Dmriprep: open-source diffusion MRI quality control framework with graphical user interface","publication_year":2023,"publication_date":"2023-04-03","ids":{"openalex":"https://openalex.org/W4362603566","doi":"https://doi.org/10.1117/12.2654470","pmid":"https://pubmed.ncbi.nlm.nih.gov/37089869"},"language":"en","primary_location":{"id":"doi:10.1117/12.2654470","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2654470","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2023: Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10118003/pdf/nihms-1890512.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007437039","display_name":"Johanna Dubos","orcid":null},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Johanna Dubos","raw_affiliation_strings":["Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002988802","display_name":"Sang kyoon Park","orcid":null},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sang Kyoon Park","raw_affiliation_strings":["Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077511968","display_name":"Roza Vlasova","orcid":"https://orcid.org/0000-0002-6455-8949"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roza Vlasova","raw_affiliation_strings":["Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105423832","display_name":"Juan Carlos Prieto","orcid":null},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Juan C. Prieto","raw_affiliation_strings":["Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065838160","display_name":"Martin Styner","orcid":"https://orcid.org/0000-0002-8747-5118"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin A. Styner","raw_affiliation_strings":["Dept Computer Science, University of North Carolina, Chapel Hill, NC, USA","Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept Computer Science, University of North Carolina, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Dept Psychiatry, University of North Carolina, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007437039"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":null,"apc_paid":null,"fwci":0.6811,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.70099482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"12464","issue":null,"first_page":"131","last_page":"131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8856444358825684},{"id":"https://openalex.org/keywords/diffusion-mri","display_name":"Diffusion MRI","score":0.5920858383178711},{"id":"https://openalex.org/keywords/artifact","display_name":"Artifact (error)","score":0.5890371203422546},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5530039072036743},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.47280827164649963},{"id":"https://openalex.org/keywords/tractography","display_name":"Tractography","score":0.41596049070358276},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.41261613368988037},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3886459171772003},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.38213515281677246},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3810677230358124},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.35204842686653137},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.15597429871559143},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1026524007320404}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8856444358825684},{"id":"https://openalex.org/C149550507","wikidata":"https://www.wikidata.org/wiki/Q899360","display_name":"Diffusion MRI","level":3,"score":0.5920858383178711},{"id":"https://openalex.org/C2779010991","wikidata":"https://www.wikidata.org/wiki/Q2720909","display_name":"Artifact (error)","level":2,"score":0.5890371203422546},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5530039072036743},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.47280827164649963},{"id":"https://openalex.org/C84787856","wikidata":"https://www.wikidata.org/wiki/Q3076659","display_name":"Tractography","level":4,"score":0.41596049070358276},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.41261613368988037},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3886459171772003},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.38213515281677246},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3810677230358124},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.35204842686653137},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.15597429871559143},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1026524007320404},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2654470","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2654470","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2023: Image Processing","raw_type":"proceedings-article"},{"id":"pmid:37089869","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37089869","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10118003","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10118003","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10118003/pdf/nihms-1890512.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10118003","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10118003","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10118003/pdf/nihms-1890512.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.7900000214576721,"id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G148774801","display_name":null,"funder_award_id":"R01EB021391","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6711469719","display_name":null,"funder_award_id":"HD103573","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6772601389","display_name":null,"funder_award_id":"HDO55741","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8347092653","display_name":null,"funder_award_id":"P50HD103573","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4362603566.pdf"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1483727497","https://openalex.org/W1987570454","https://openalex.org/W2032254014","https://openalex.org/W2110431535","https://openalex.org/W2154839390","https://openalex.org/W2169499022","https://openalex.org/W2470259419","https://openalex.org/W2594272198","https://openalex.org/W2793631099","https://openalex.org/W2971368344","https://openalex.org/W2977883299","https://openalex.org/W3174100758","https://openalex.org/W6628804216"],"related_works":["https://openalex.org/W2488984732","https://openalex.org/W1698039310","https://openalex.org/W177321449","https://openalex.org/W2528560501","https://openalex.org/W2063864867","https://openalex.org/W2124285946","https://openalex.org/W2495580112","https://openalex.org/W2000834694","https://openalex.org/W2032211030","https://openalex.org/W1768525409"],"abstract_inverted_index":{"In":[0,217],"the":[1,39,48,79,110],"last":[2],"decade,":[3],"investigating":[4],"white":[5],"matter":[6],"microstructure":[7],"and":[8,33,72,76,105,116,143,149,161,190,196,200,214],"connectivity":[9],"via":[10],"diffusion":[11,133],"MRI":[12,134],"(dmri)":[13],"has":[14,69,95],"become":[15,96],"a":[16,29,97,123,131,140,170,222],"crucial":[17],"cornerstone":[18],"in":[19,89,114],"neuroimaging":[20],"studies.":[21],"However,":[22],"even":[23],"modern":[24,227],"dmri":[25,65,84,106,229],"sequences":[26],"have":[27,120],"inherently":[28],"low":[30],"signal-to-noise":[31],"ratio":[32],"long":[34],"acquisition":[35,115],"times,":[36],"depending":[37],"on":[38,156],"spatial":[40],"resolution.":[41],"Furthermore,":[42],"many":[43],"types":[44],"of":[45,51,63,103,178,212],"artifacts":[46],"complicate":[47],"appropriate":[49,54,83],"analysis":[50,135],"dmri,":[52],"necessitating":[53],"quality":[55],"control":[56],"(QC)":[57],"procedures,":[58],"including":[59],"exclusion":[60],"and/or":[61],"correction":[62,118],"inappropriate/erroneous":[64],"data.":[66],"Our":[67],"group":[68],"been":[70],"developing":[71],"promoting":[73],"QC":[74,93,107,146,177,211],"procedures":[75],"tools":[77],"to":[78,81,122,125,168],"community":[80],"enable":[82],"analyses.":[85],"Since":[86],"its":[87,101,150],"development":[88],"2011,":[90],"our":[91,219],"DTIPrep":[92],"tool":[94,99,174],"major":[98],"due":[100],"ease":[102],"use":[104],"performance.":[108],"Over":[109],"years,":[111],"novel":[112,132,223],"developments":[113],"artifact":[117],"methods":[119],"led":[121],"need":[124],"modernize":[126],"DTIPrep.":[127],"Here,":[128],"we":[129],"present":[130],"environment":[136],"called":[137],"<i>dtiplayground</i>":[138],"with":[139],"fully":[141],"redesigned":[142],"significantly":[144],"enhanced":[145],"module":[147],"<i>dmriprep</i>,":[148],"graphical":[151],"user":[152,164,172,207],"interface":[153,165,208],"<i>dmriprep-ui</i>,":[154],"building":[155],"in-house":[157],"developed":[158],"code,":[159],"FSL":[160],"dipy.":[162],"The":[163],"is":[166],"designed":[167],"be":[169],"unified,":[171],"friendly":[173],"for":[175,209,226],"thorough":[176],"dMRI":[179],"data.Artifacts":[180],"addressed":[181],"by":[182],"<i>dmriprep</i>":[183],"include":[184],"eddy-currents,":[185],"head":[186],"motion,":[187],"bed":[188],"vibration":[189],"pulsation,":[191],"venetian":[192],"blind":[193],"artifacts,":[194],"slice-wise":[195],"gradient-wise":[197],"intensity":[198],"inconsistencies,":[199],"susceptibility":[201],"artifacts.":[202],"It":[203],"further":[204],"provides":[205],"an":[206],"visual":[210],"gradients":[213],"automated":[215],"tractography.":[216],"summary,":[218],"work":[220],"presents":[221],"open-source":[224],"framework":[225],"comprehensive":[228],"QC.":[230]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}