{"id":"https://openalex.org/W4362486789","doi":"https://doi.org/10.1117/12.2654300","title":"Automatic, deep-learning-based segmentation of the amygdalohippocampectomy resection cavity in MR images","display_name":"Automatic, deep-learning-based segmentation of the amygdalohippocampectomy resection cavity in MR images","publication_year":2023,"publication_date":"2023-04-03","ids":{"openalex":"https://openalex.org/W4362486789","doi":"https://doi.org/10.1117/12.2654300"},"language":"en","primary_location":{"id":"doi:10.1117/12.2654300","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1117/12.2654300","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2023: Image-Guided Procedures, Robotic Interventions, and Modeling","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035505763","display_name":"Dingjie Su","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dingjie Su","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036892306","display_name":"Danika Paulo","orcid":"https://orcid.org/0000-0002-2292-1164"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Danika L. Paulo","raw_affiliation_strings":["Vanderbilt Univ. Medical Ctr. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. Medical Ctr. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001801092","display_name":"Tyler Ball","orcid":"https://orcid.org/0000-0003-3921-7330"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tyler Ball","raw_affiliation_strings":["Vanderbilt Univ. Medical Ctr. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. Medical Ctr. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043874688","display_name":"Victoria L. Morgan","orcid":"https://orcid.org/0000-0001-8263-2324"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210150144","display_name":"LIG Science (United States)","ror":"https://ror.org/05035cc38","country_code":"US","type":"company","lineage":["https://openalex.org/I4210150144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victoria L. Morgan","raw_affiliation_strings":["Vanderbilt Univ. Institute of Imaging Science (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. Institute of Imaging Science (United States)","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210150144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029905768","display_name":"Dario J. Englot","orcid":"https://orcid.org/0000-0001-8373-690X"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dario J. Englot","raw_affiliation_strings":["Vanderbilt Univ. Medical Ctr. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. Medical Ctr. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014896512","display_name":"Beno\u00eet M. Dawant","orcid":"https://orcid.org/0000-0002-3804-8400"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benoit M. Dawant","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5035505763"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06282571,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"16","issue":null,"first_page":"33","last_page":"33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10094","display_name":"Epilepsy research and treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2738","display_name":"Psychiatry and Mental health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10094","display_name":"Epilepsy research and treatment","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2738","display_name":"Psychiatry and Mental health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dice","display_name":"Dice","score":0.7360248565673828},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.667691707611084},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5762604475021362},{"id":"https://openalex.org/keywords/temporal-lobe","display_name":"Temporal lobe","score":0.5446237921714783},{"id":"https://openalex.org/keywords/anterior-temporal-lobectomy","display_name":"Anterior temporal lobectomy","score":0.5104960203170776},{"id":"https://openalex.org/keywords/amygdala","display_name":"Amygdala","score":0.5096902847290039},{"id":"https://openalex.org/keywords/epilepsy","display_name":"Epilepsy","score":0.48873019218444824},{"id":"https://openalex.org/keywords/hippocampus","display_name":"Hippocampus","score":0.48868826031684875},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48755139112472534},{"id":"https://openalex.org/keywords/resection","display_name":"Resection","score":0.47373831272125244},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.3881479799747467},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21096977591514587},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.16718319058418274},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13168707489967346},{"id":"https://openalex.org/keywords/surgery","display_name":"Surgery","score":0.12971851229667664},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.11624249815940857}],"concepts":[{"id":"https://openalex.org/C22029948","wikidata":"https://www.wikidata.org/wiki/Q45089","display_name":"Dice","level":2,"score":0.7360248565673828},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.667691707611084},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5762604475021362},{"id":"https://openalex.org/C2781099131","wikidata":"https://www.wikidata.org/wiki/Q744385","display_name":"Temporal lobe","level":3,"score":0.5446237921714783},{"id":"https://openalex.org/C2779513729","wikidata":"https://www.wikidata.org/wiki/Q4771405","display_name":"Anterior temporal lobectomy","level":4,"score":0.5104960203170776},{"id":"https://openalex.org/C2779144063","wikidata":"https://www.wikidata.org/wiki/Q338924","display_name":"Amygdala","level":2,"score":0.5096902847290039},{"id":"https://openalex.org/C2778186239","wikidata":"https://www.wikidata.org/wiki/Q41571","display_name":"Epilepsy","level":2,"score":0.48873019218444824},{"id":"https://openalex.org/C2781161787","wikidata":"https://www.wikidata.org/wiki/Q48360","display_name":"Hippocampus","level":2,"score":0.48868826031684875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48755139112472534},{"id":"https://openalex.org/C159110652","wikidata":"https://www.wikidata.org/wiki/Q17078201","display_name":"Resection","level":2,"score":0.47373831272125244},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.3881479799747467},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21096977591514587},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.16718319058418274},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13168707489967346},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.12971851229667664},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11624249815940857}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2654300","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1117/12.2654300","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2023: Image-Guided Procedures, Robotic Interventions, and Modeling","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W1967003040","https://openalex.org/W2025806411","https://openalex.org/W2047540883","https://openalex.org/W2084160370","https://openalex.org/W2116040950","https://openalex.org/W2239577082","https://openalex.org/W2415932563","https://openalex.org/W2566914081","https://openalex.org/W2921676720","https://openalex.org/W2944835261","https://openalex.org/W2965361078","https://openalex.org/W3014974815","https://openalex.org/W3112701542","https://openalex.org/W3142164167","https://openalex.org/W3165850692","https://openalex.org/W3172741615","https://openalex.org/W3180226627","https://openalex.org/W4242725429","https://openalex.org/W4255130478","https://openalex.org/W4289489408","https://openalex.org/W6639824700","https://openalex.org/W6689802241","https://openalex.org/W6754551840","https://openalex.org/W6785795694"],"related_works":["https://openalex.org/W2356906161","https://openalex.org/W2378158101","https://openalex.org/W2371543292","https://openalex.org/W4245162863","https://openalex.org/W2386873379","https://openalex.org/W2087910814","https://openalex.org/W2375179687","https://openalex.org/W2940596499","https://openalex.org/W2050936353","https://openalex.org/W2097695069"],"abstract_inverted_index":{"Selective":[0],"amygdalohippocampectomy":[1],"(SelAH)":[2],"for":[3,30,80],"mesial":[4],"temporal":[5],"lobe":[6],"epilepsy":[7],"(mTLE)":[8],"involves":[9],"the":[10,13,17,85,89,92,104,108,138,152,162,177,191,197],"resection":[11,198],"of":[12,44,91,107,196],"anterior":[14],"hippocampus":[15,93],"and":[16,62,94,124,155,183,193],"amygdala.":[18],"A":[19],"recent":[20],"study":[21],"related":[22],"to":[23,112,136,151,160],"SelAH":[24],"reports":[25],"that":[26,96,127,190],"among":[27,73],"168":[28],"patients":[29],"whom":[31],"two-year":[32],"Engel":[33,40,49,57,65],"outcomes":[34,42,51,59,67,83],"data":[35],"were":[36],"available,":[37],"73%":[38],"had":[39,48,56,64],"I":[41],"(free":[43],"disabling":[45,53],"seizure);":[46],"16.6%":[47],"II":[50],"(rare":[52],"seizures);":[54],"4.7%":[55],"III":[58],"(worthwhile":[60],"improvement);":[61],"5.3%":[63],"IV":[66],"(no":[68],"worthwhile":[69],"improvement).":[70],"Success":[71],"rate":[72],"sites":[74],"also":[75],"varies":[76],"greatly.":[77],"Possible":[78],"explanations":[79],"variability":[81],"in":[82,149,158],"are":[84],"resected":[86,109],"volume":[87],"and/or":[88],"subregion":[90],"amygdala":[95],"have":[97],"been":[98],"resected.":[99],"To":[100],"explore":[101,132],"this":[102],"hypothesis,":[103],"accurate":[105,194],"segmentation":[106,195],"cavity":[110,163,199],"needs":[111],"be":[113],"performed":[114],"on":[115],"a":[116,122,134,143,171],"large":[117],"scale.":[118],"This":[119],"is,":[120],"however,":[121],"difficult":[123],"time-consuming":[125],"task":[126],"requires":[128],"expertise.":[129],"Here":[130],"we":[131],"using":[133],"nnUNET":[135,159],"perform":[137],"task.":[139],"Inspired":[140],"by":[141],"Youngeun,":[142],"level":[144],"set":[145,174],"loss":[146,157],"is":[147,186,200],"used":[148],"addition":[150],"original":[153],"DICE":[154,179],"cross-entropy":[156],"capture":[161],"boundaries":[164],"better.":[165],"We":[166],"show":[167],"that,":[168],"even":[169],"with":[170],"modest-sized":[172],"training":[173],"(25":[175],"volumes),":[176],"median":[178],"value":[180],"between":[181],"automated":[182],"manual":[184],"segmentations":[185],"0.88,":[187],"which":[188],"suggests":[189],"automatic":[192],"achievable.":[201]},"counts_by_year":[],"updated_date":"2025-12-24T23:09:58.560324","created_date":"2025-10-10T00:00:00"}
