{"id":"https://openalex.org/W4220662447","doi":"https://doi.org/10.1117/12.2613159","title":"Evaluating the impact of MR image harmonization on thalamus deep network segmentation","display_name":"Evaluating the impact of MR image harmonization on thalamus deep network segmentation","publication_year":2022,"publication_date":"2022-03-31","ids":{"openalex":"https://openalex.org/W4220662447","doi":"https://doi.org/10.1117/12.2613159","pmid":"https://pubmed.ncbi.nlm.nih.gov/35514535"},"language":"en","primary_location":{"id":"doi:10.1117/12.2613159","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2613159","pdf_url":null,"source":{"id":"https://openalex.org/S4363607561","display_name":"Medical Imaging 2022: Image Processing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2022: Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9070007","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061950333","display_name":"Muhan Shao","orcid":"https://orcid.org/0000-0002-4686-4395"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Muhan Shao","raw_affiliation_strings":["Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA","Johns Hopkins Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003957722","display_name":"Lianrui Zuo","orcid":"https://orcid.org/0000-0002-5923-9097"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lianrui Zuo","raw_affiliation_strings":["Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA","Laboratory of Behavioral Neuroscience, National Institute on Aging, National Institute of Health, Baltimore, MD 21224, USA","Johns Hopkins Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Laboratory of Behavioral Neuroscience, National Institute on Aging, National Institute of Health, Baltimore, MD 21224, USA","institution_ids":[]},{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075622613","display_name":"Aaron Carass","orcid":"https://orcid.org/0000-0003-4939-5085"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Carass","raw_affiliation_strings":["Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004467381","display_name":"Jiachen Zhuo","orcid":"https://orcid.org/0000-0001-6637-701X"},"institutions":[{"id":"https://openalex.org/I116545467","display_name":"University of Mary","ror":"https://ror.org/055f0jp24","country_code":"US","type":"education","lineage":["https://openalex.org/I116545467"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiachen Zhuo","raw_affiliation_strings":["Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD, USA","Univ. of Maryland School of Medicine (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]},{"raw_affiliation_string":"Univ. of Maryland School of Medicine (United States)","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I116545467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083023771","display_name":"Rao P. Gullapalli","orcid":"https://orcid.org/0000-0003-0551-0379"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I116545467","display_name":"University of Mary","ror":"https://ror.org/055f0jp24","country_code":"US","type":"education","lineage":["https://openalex.org/I116545467"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rao P. Gullapalli","raw_affiliation_strings":["Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD, USA","Univ. of Maryland School of Medicine (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]},{"raw_affiliation_string":"Univ. of Maryland School of Medicine (United States)","institution_ids":["https://openalex.org/I126744593","https://openalex.org/I116545467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066682675","display_name":"Jerry L. Prince","orcid":"https://orcid.org/0000-0002-6553-0876"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jerry L. Prince","raw_affiliation_strings":["Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA","Johns Hopkins Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, The Johns Hopkins University, Baltimore, MD 21218, USA","institution_ids":["https://openalex.org/I145311948"]},{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5061950333"],"corresponding_institution_ids":["https://openalex.org/I145311948"],"apc_list":null,"apc_paid":null,"fwci":1.7879,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.88729232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"12032","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7143548727035522},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.6107677221298218},{"id":"https://openalex.org/keywords/thalamus","display_name":"Thalamus","score":0.6077372431755066},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6055967807769775},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5588805079460144},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5444821119308472},{"id":"https://openalex.org/keywords/harmonization","display_name":"Harmonization","score":0.5329272150993347},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.41293931007385254},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38210228085517883},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.1574055552482605},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.14335012435913086},{"id":"https://openalex.org/keywords/art","display_name":"Art","score":0.06398805975914001},{"id":"https://openalex.org/keywords/aesthetics","display_name":"Aesthetics","score":0.055764973163604736}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7143548727035522},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.6107677221298218},{"id":"https://openalex.org/C2779246727","wikidata":"https://www.wikidata.org/wiki/Q184215","display_name":"Thalamus","level":2,"score":0.6077372431755066},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6055967807769775},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5588805079460144},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5444821119308472},{"id":"https://openalex.org/C2779962950","wikidata":"https://www.wikidata.org/wiki/Q5659376","display_name":"Harmonization","level":2,"score":0.5329272150993347},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.41293931007385254},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38210228085517883},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.1574055552482605},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.14335012435913086},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.06398805975914001},{"id":"https://openalex.org/C107038049","wikidata":"https://www.wikidata.org/wiki/Q35986","display_name":"Aesthetics","level":1,"score":0.055764973163604736}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2613159","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2613159","pdf_url":null,"source":{"id":"https://openalex.org/S4363607561","display_name":"Medical Imaging 2022: Image Processing","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2022: Image Processing","raw_type":"proceedings-article"},{"id":"pmid:35514535","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35514535","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9070007","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9070007","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9070007","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9070007","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W276996006","https://openalex.org/W1987869189","https://openalex.org/W1989033585","https://openalex.org/W1998299241","https://openalex.org/W2099166256","https://openalex.org/W2302255633","https://openalex.org/W2320868124","https://openalex.org/W2464708700","https://openalex.org/W2897107060","https://openalex.org/W2903804687","https://openalex.org/W2946355430","https://openalex.org/W2949706042","https://openalex.org/W3003864320","https://openalex.org/W3022596695","https://openalex.org/W3089660604","https://openalex.org/W3093066554","https://openalex.org/W3152174881","https://openalex.org/W3173519548","https://openalex.org/W3197863729","https://openalex.org/W4239167255","https://openalex.org/W4240271001","https://openalex.org/W4285751350","https://openalex.org/W4295245474","https://openalex.org/W6610132898","https://openalex.org/W6698183232","https://openalex.org/W6700263850","https://openalex.org/W6732751041","https://openalex.org/W6756629288","https://openalex.org/W6784091985"],"related_works":["https://openalex.org/W2006073222","https://openalex.org/W2488916264","https://openalex.org/W2323573032","https://openalex.org/W1908077024","https://openalex.org/W198625436","https://openalex.org/W2095388346","https://openalex.org/W2379751185","https://openalex.org/W2379404183","https://openalex.org/W2004509987","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Medical":[0],"image":[1,11,83,104,127,258],"segmentation":[2,14,67,137,171,269],"is":[3,97,222],"one":[4,173,184],"of":[5,9,15,29,133,141,313,322],"the":[6,30,54,58,90,100,108,122,131,136,155,178,195,223,252,262,268,277,283,293,300,307,320],"core":[7],"tasks":[8],"medical":[10],"analysis.":[12],"Automatic":[13],"brain":[16,210],"magnetic":[17],"resonance":[18],"images":[19,176],"(MRIs)":[20],"can":[21,85,260],"be":[22,86],"used":[23,48,87],"to":[24,38,69,88,102,120,153,309],"visualize":[25],"and":[26,60,129,177,190,212,242,264,282],"track":[27],"changes":[28],"brain's":[31],"anatomical":[32],"structures":[33],"that":[34,257],"may":[35],"occur":[36],"due":[37],"normal":[39],"aging":[40],"or":[41],"disease.":[42],"Machine":[43],"learning":[44],"techniques":[45],"are":[46,148,166],"widely":[47],"in":[49,157,319],"automatic":[50],"structure":[51],"segmentation.":[52],"However,":[53,150],"contrast":[55,91],"variation":[56],"between":[57,92],"training":[59,324],"testing":[61],"data":[62,94,146,160,185,197,204,225,244,254,280,288,305,314],"makes":[63],"it":[64],"difficult":[65],"for":[66,99],"algorithms":[68],"generate":[70],"consistent":[71],"results.":[72],"To":[73],"address":[74],"this":[75,112],"problem,":[76],"an":[77],"image-to-image":[78],"translation":[79],"technique":[80],"called":[81],"MR":[82,126],"harmonization":[84,101,134,220,259,278],"match":[89],"different":[93,234],"sets.":[95],"It":[96],"important":[98],"transform":[103],"intensity":[105],"while":[106],"maintaining":[107],"underlying":[109],"anatomy.":[110],"In":[111],"paper,":[113],"we":[114,151],"present":[115],"a":[116,233],"3D":[117],"U-Net":[118],"algorithm":[119],"segment":[121],"thalamus":[123,156],"from":[124,315],"multiple":[125],"modalities":[128],"investigate":[130],"impact":[132],"on":[135,144,183,194,240,251,276,286,296,303],"algorithm.":[138],"Manual":[139],"delineations":[140],"thalamic":[142],"nuclei":[143],"two":[145,170,203,209,272],"sets":[147],"available.":[149],"aim":[152],"analyze":[154],"another":[158],"large":[159,224,311],"set":[161,186,198,226,281],"where":[162],"ground":[163],"truth":[164],"labels":[165],"lacking.":[167],"We":[168],"trained":[169,239,285,295,302],"networks,":[172],"with":[174,180,187,199,208,215],"unharmonized":[175,241,297],"other":[179,196,253,316],"harmonized":[181,243,287,304],"images,":[182],"manual":[188,200,228],"labels,":[189,229],"compared":[191],"their":[192],"performances":[193],"labels.":[201],"These":[202],"groups":[205],"were":[206,213,274],"diagnosed":[207],"disorders":[211],"acquired":[214],"similar":[216],"imaging":[217,235],"protocols.":[218],"The":[219,237,271],"target":[221,279],"without":[227],"which":[230],"also":[231],"has":[232],"protocol.":[236],"networks":[238,273],"showed":[245,289],"no":[246],"significant":[247,290],"difference":[248],"when":[249],"evaluating":[250],"set;":[255],"demonstrating":[256],"maintain":[261],"anatomy":[263],"does":[265],"not":[266],"affect":[267],"task.":[270],"evaluated":[275],"network":[284,294,301],"improvement":[291],"over":[292],"data.":[298,325],"Therefore,":[299],"provides":[306],"potential":[308],"process":[310],"amounts":[312],"sites,":[317],"even":[318],"absence":[321],"site-specific":[323]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
