{"id":"https://openalex.org/W3199880605","doi":"https://doi.org/10.1117/12.2611528","title":"WeakSTIL: weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you need","display_name":"WeakSTIL: weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you need","publication_year":2022,"publication_date":"2022-04-04","ids":{"openalex":"https://openalex.org/W3199880605","doi":"https://doi.org/10.1117/12.2611528","mag":"3199880605"},"language":"en","primary_location":{"id":"doi:10.1117/12.2611528","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2611528","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2022: Digital and Computational Pathology","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004997134","display_name":"Yoni Schirris","orcid":"https://orcid.org/0000-0003-0217-8737"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]},{"id":"https://openalex.org/I2898336195","display_name":"The Netherlands Cancer Institute","ror":"https://ror.org/03xqtf034","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2898336195"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Yoni Schirris","raw_affiliation_strings":["The Netherlands Cancer Institute (Netherlands)","Univ. of Amsterdam (Netherlands)"],"affiliations":[{"raw_affiliation_string":"The Netherlands Cancer Institute (Netherlands)","institution_ids":["https://openalex.org/I2898336195"]},{"raw_affiliation_string":"Univ. of Amsterdam (Netherlands)","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002905689","display_name":"Mendel Engelaer","orcid":null},"institutions":[{"id":"https://openalex.org/I2898336195","display_name":"The Netherlands Cancer Institute","ror":"https://ror.org/03xqtf034","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2898336195"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Mendel Engelaer","raw_affiliation_strings":["The Netherlands Cancer Institute (Netherlands)","Vrije Univ. Amsterdam (Netherlands)"],"affiliations":[{"raw_affiliation_string":"The Netherlands Cancer Institute (Netherlands)","institution_ids":["https://openalex.org/I2898336195"]},{"raw_affiliation_string":"Vrije Univ. Amsterdam (Netherlands)","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076734981","display_name":"Andreas Panteli","orcid":null},"institutions":[{"id":"https://openalex.org/I2898336195","display_name":"The Netherlands Cancer Institute","ror":"https://ror.org/03xqtf034","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2898336195"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andreas Panteli","raw_affiliation_strings":["The Netherlands Cancer Institute (Netherlands)","Univ. of Amsterdam (Netherlands)"],"affiliations":[{"raw_affiliation_string":"The Netherlands Cancer Institute (Netherlands)","institution_ids":["https://openalex.org/I2898336195"]},{"raw_affiliation_string":"Univ. of Amsterdam (Netherlands)","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043980504","display_name":"Hugo M. Horlings","orcid":"https://orcid.org/0000-0003-4782-8828"},"institutions":[{"id":"https://openalex.org/I2898336195","display_name":"The Netherlands Cancer Institute","ror":"https://ror.org/03xqtf034","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2898336195"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Hugo M. Horlings","raw_affiliation_strings":["The Netherlands Cancer Institute (Netherlands)"],"affiliations":[{"raw_affiliation_string":"The Netherlands Cancer Institute (Netherlands)","institution_ids":["https://openalex.org/I2898336195"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002625178","display_name":"Efstratios Gavves","orcid":"https://orcid.org/0000-0001-8947-1332"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Efstratios Gavves","raw_affiliation_strings":["Univ. of Amsterdam (Netherlands)"],"affiliations":[{"raw_affiliation_string":"Univ. of Amsterdam (Netherlands)","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031023373","display_name":"Jonas Teuwen","orcid":"https://orcid.org/0000-0002-1825-1428"},"institutions":[{"id":"https://openalex.org/I2898336195","display_name":"The Netherlands Cancer Institute","ror":"https://ror.org/03xqtf034","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2898336195"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jonas Teuwen","raw_affiliation_strings":["Radboud Univ. Medical Ctr. (Netherlands)","The Netherlands Cancer Institute (Netherlands)","Univ. of Amsterdam (Netherlands)"],"affiliations":[{"raw_affiliation_string":"Radboud Univ. Medical Ctr. (Netherlands)","institution_ids":["https://openalex.org/I145872427"]},{"raw_affiliation_string":"The Netherlands Cancer Institute (Netherlands)","institution_ids":["https://openalex.org/I2898336195"]},{"raw_affiliation_string":"Univ. of Amsterdam (Netherlands)","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5004997134"],"corresponding_institution_ids":["https://openalex.org/I2898336195","https://openalex.org/I887064364"],"apc_list":null,"apc_paid":null,"fwci":1.0273,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.74136171,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"13","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10185","display_name":"Lymphoma Diagnosis and Treatment","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10185","display_name":"Lymphoma Diagnosis and Treatment","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10253","display_name":"Sarcoma Diagnosis and Treatment","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stromal-cell","display_name":"Stromal cell","score":0.6532158851623535},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.54019695520401},{"id":"https://openalex.org/keywords/lymphocyte","display_name":"Lymphocyte","score":0.497560054063797},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.48792263865470886},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.37045782804489136},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36710256338119507},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28570953011512756},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.18603381514549255}],"concepts":[{"id":"https://openalex.org/C16930146","wikidata":"https://www.wikidata.org/wiki/Q4381253","display_name":"Stromal cell","level":2,"score":0.6532158851623535},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.54019695520401},{"id":"https://openalex.org/C2777761686","wikidata":"https://www.wikidata.org/wiki/Q715347","display_name":"Lymphocyte","level":2,"score":0.497560054063797},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.48792263865470886},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.37045782804489136},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36710256338119507},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28570953011512756},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.18603381514549255}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1117/12.2611528","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2611528","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2022: Digital and Computational Pathology","raw_type":"proceedings-article"},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/09113083-1f2b-4589-acf2-14a14d8f382c","is_oa":false,"landing_page_url":"https://hdl.handle.net/11245.1/09113083-1f2b-4589-acf2-14a14d8f382c","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Schirris, Y, Engelaer, M, Panteli, A, Horlings, H M, Gavves, E & Teuwen, J 2022, WeakSTIL: Weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you need. in J E Tomaszewski, A D Ward & R M Levenson (eds), Medical Imaging 2022: Digital and Computational Pathology : 21-27 March 2022, online., 120390B , Proceedings of SPIE, vol. 12039, Progress in Biomedical Optics and Imaging, no. 55, vol. 23, SPIE, Bellingham, WA, SPIE Medical Imaging 2022, San Diego, California, United States, 20/02/22. https://doi.org/10.1117/12.2611528","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:publications/09113083-1f2b-4589-acf2-14a14d8f382c","is_oa":false,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/weakstil-weak-wholeslide-image-level-stromal-tumor-infiltrating-lymphocyte-scores-are-all-you-need(09113083-1f2b-4589-acf2-14a14d8f382c).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Schirris, Y, Engelaer, M, Panteli, A, Horlings, H M, Gavves, E & Teuwen, J 2022, WeakSTIL: Weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you need. in J E Tomaszewski, A D Ward & R M Levenson (eds), Medical Imaging 2022: Digital and Computational Pathology : 21-27 March 2022, online., 120390B , Proceedings of SPIE, vol. 12039, Progress in Biomedical Optics and Imaging, no. 55, vol. 23, SPIE, Bellingham, WA, SPIE Medical Imaging 2022, San Diego, California, United States, 20/02/22. https://doi.org/10.1117/12.2611528","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:uvapub:oai:dare.uva.nl:openaire_cris_publications/09113083-1f2b-4589-acf2-14a14d8f382c","is_oa":false,"landing_page_url":"https://dare.uva.nl/personal/pure/en/publications/weakstil-weak-wholeslide-image-level-stromal-tumor-infiltrating-lymphocyte-scores-are-all-you-need(09113083-1f2b-4589-acf2-14a14d8f382c).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Medical Imaging 2022: Digital and Computational Pathology: 21-27 March 2022, online","raw_type":"info:eu-repo/semantics/conferencepaper"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.6200000047683716}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W2096283457","https://openalex.org/W2120431466","https://openalex.org/W2132619562","https://openalex.org/W2134878729","https://openalex.org/W2149874439","https://openalex.org/W2221588520","https://openalex.org/W2744685612","https://openalex.org/W2766985996","https://openalex.org/W2767211032","https://openalex.org/W2783074748","https://openalex.org/W2796409016","https://openalex.org/W2804778863","https://openalex.org/W2886304067","https://openalex.org/W2892951532","https://openalex.org/W2998555149","https://openalex.org/W3008826523","https://openalex.org/W3009233496","https://openalex.org/W3010122169","https://openalex.org/W3028510743","https://openalex.org/W3030889987","https://openalex.org/W3034978746","https://openalex.org/W3085521743","https://openalex.org/W3091548269","https://openalex.org/W3096715224","https://openalex.org/W3108181344","https://openalex.org/W3113084721","https://openalex.org/W3154124482","https://openalex.org/W3176612188","https://openalex.org/W3186188127","https://openalex.org/W3187048440","https://openalex.org/W3195051419","https://openalex.org/W3212889265","https://openalex.org/W4239147031","https://openalex.org/W6774314701","https://openalex.org/W6786147341","https://openalex.org/W6787247776","https://openalex.org/W6793410239","https://openalex.org/W6799347487"],"related_works":["https://openalex.org/W2980421756","https://openalex.org/W2314776203","https://openalex.org/W3118727544","https://openalex.org/W2406061890","https://openalex.org/W2104874568","https://openalex.org/W1987165109","https://openalex.org/W2035982783","https://openalex.org/W1982290474","https://openalex.org/W2743839400","https://openalex.org/W1995613052"],"abstract_inverted_index":{"We":[0,139],"present":[1],"WeakSTIL,":[2],"an":[3,174,178],"interpretable":[4,239],"two-stage":[5],"weak":[6,116,123],"label":[7],"deep":[8],"learning":[9,86,110],"pipeline":[10],"for":[11,39,98],"scoring":[12],"the":[13,47,102,127,155,188,200,220,225,229],"percentage":[14],"of":[15,26,76,162,164,180,204,222],"stromal":[16],"tumor":[17,42,103],"infiltrating":[18],"lymphocytes":[19],"(sTIL%)":[20],"in":[21,68,101],"H&E-stained":[22],"whole-slide":[23],"images":[24],"(WSIs)":[25],"breast":[27,244],"cancer":[28,245],"tissue.":[29],"The":[30],"sTIL%":[31,96,157,240],"score":[32],"is":[33,64,143],"a":[34,77,80,107,115,122,160],"prognostic":[35],"and":[36,51,54,58,91,177,224,238],"predictive":[37],"biomarker":[38,63],"many":[40],"solid":[41],"types.":[43],"However,":[44],"due":[45],"to":[46,93,132,170,215,219,235,242],"high":[48,52],"labeling":[49],"efforts":[50,130],"intra-":[53],"interobserver":[55],"variability":[56],"within":[57],"between":[59],"expert":[60,175],"annotators,":[61],"this":[62],"currently":[65,134],"not":[66],"used":[67,234],"routine":[69],"clinical":[70],"decision":[71],"making.":[72],"WeakSTIL":[73,142,205,212,231],"compresses":[74],"tiles":[75],"WSI":[78],"using":[79,106],"feature":[81],"extractor":[82],"pre-trained":[83],"with":[84],"self-supervised":[85],"on":[87],"unlabeled":[88],"histopathology":[89],"data":[90],"learns":[92],"predict":[94],"precise":[95],"scores":[97,171],"each":[99],"tile":[100],"bed":[104],"by":[105,173],"multiple":[108],"instance":[109],"regressor":[111],"that":[112,141,199,211],"only":[113,121],"requires":[114],"WSI-level":[117,156],"label.":[118],"By":[119],"requiring":[120],"label,":[124],"we":[125,197],"overcome":[126],"large":[128],"annotation":[129],"required":[131],"train":[133],"existing":[135],"TIL":[136,150],"detection":[137,151],"methods.":[138],"show":[140,198],"at":[144],"least":[145],"as":[146,148,187],"good":[147],"other":[149],"methods":[152],"when":[153,168,184],"predicting":[154],"score,":[158],"reaching":[159],"coefficient":[161],"determination":[163],"0.45":[165],"&plusmn;":[166,182],"0.15":[167],"compared":[169],"generated":[172],"pathologist,":[176],"AUC":[179],"0.89":[181],"0.05":[183],"treating":[185],"it":[186],"clinically":[189],"interesting":[190],"sTIL-high":[191],"vs":[192],"sTIL-low":[193],"classification":[194],"task.":[195],"Additionally,":[196],"intermediate":[201],"tile-level":[202],"predictions":[203,241],"are":[206],"highly":[207],"interpretable,":[208],"which":[209],"suggests":[210],"pays":[213],"attention":[214],"latent":[216],"features":[217],"related":[218],"number":[221],"TILs":[223],"tissue":[226],"type.":[227],"In":[228],"future,":[230],"may":[232],"be":[233],"provide":[236],"consistent":[237],"stratify":[243],"patients":[246],"into":[247],"targeted":[248],"therapy":[249],"arms.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-03-16T09:10:04.655348","created_date":"2025-10-10T00:00:00"}
