{"id":"https://openalex.org/W4220662868","doi":"https://doi.org/10.1117/12.2607371","title":"Segmentation of the mouse skull for MRI guided transcranial focused ultrasound therapy planning","display_name":"Segmentation of the mouse skull for MRI guided transcranial focused ultrasound therapy planning","publication_year":2022,"publication_date":"2022-03-11","ids":{"openalex":"https://openalex.org/W4220662868","doi":"https://doi.org/10.1117/12.2607371"},"language":"en","primary_location":{"id":"doi:10.1117/12.2607371","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2607371","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5445/ir/1000148095","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017963342","display_name":"Torsten Hopp","orcid":"https://orcid.org/0000-0001-7324-1735"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Torsten Hopp","raw_affiliation_strings":["Heidelberg Univ. (Germany)","Karlsruher Institut f\u00fcr Technologie (Germany)"],"affiliations":[{"raw_affiliation_string":"Heidelberg Univ. (Germany)","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Karlsruher Institut f\u00fcr Technologie (Germany)","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006115204","display_name":"Luca Springer","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luca Springer","raw_affiliation_strings":["Heidelberg Univ. (Germany)","Karlsruher Institut f\u00fcr Technologie (Germany)"],"affiliations":[{"raw_affiliation_string":"Heidelberg Univ. (Germany)","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Karlsruher Institut f\u00fcr Technologie (Germany)","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105841026","display_name":"C. J. Gross","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carl Gross","raw_affiliation_strings":["Heidelberg Univ. (Germany)","Karlsruher Institut f\u00fcr Technologie (Germany)"],"affiliations":[{"raw_affiliation_string":"Heidelberg Univ. (Germany)","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Karlsruher Institut f\u00fcr Technologie (Germany)","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026995906","display_name":"Saskia Grudzenski-Theis","orcid":null},"institutions":[{"id":"https://openalex.org/I177802217","display_name":"University of Mannheim","ror":"https://ror.org/031bsb921","country_code":"DE","type":"education","lineage":["https://openalex.org/I177802217"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Saskia Grudzenski-Theis","raw_affiliation_strings":["Heidelberg Univ. (Germany)","Univ. Medicine Mannheim (Germany)"],"affiliations":[{"raw_affiliation_string":"Heidelberg Univ. (Germany)","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Univ. Medicine Mannheim (Germany)","institution_ids":["https://openalex.org/I177802217"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039110908","display_name":"Franziska Mathis-Ullrich","orcid":"https://orcid.org/0000-0001-5239-5305"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Franziska Mathis-Ullrich","raw_affiliation_strings":["Karlsruher Institut f\u00fcr Technologie (Germany)"],"affiliations":[{"raw_affiliation_string":"Karlsruher Institut f\u00fcr Technologie (Germany)","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079699761","display_name":"Nicole V. Ruiter","orcid":"https://orcid.org/0000-0002-4411-4056"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nicole Ruiter","raw_affiliation_strings":["Heidelberg Univ. (Germany)","Karlsruher Institut f\u00fcr Technologie (Germany)"],"affiliations":[{"raw_affiliation_string":"Heidelberg Univ. (Germany)","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"Karlsruher Institut f\u00fcr Technologie (Germany)","institution_ids":["https://openalex.org/I102335020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5017963342"],"corresponding_institution_ids":["https://openalex.org/I102335020","https://openalex.org/I223822909"],"apc_list":null,"apc_paid":null,"fwci":0.0801,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.3225848,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"20","issue":null,"first_page":"55","last_page":"55"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10958","display_name":"Ultrasound and Hyperthermia Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10958","display_name":"Ultrasound and Hyperthermia Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10727","display_name":"Ultrasound Imaging and Elastography","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.820138692855835},{"id":"https://openalex.org/keywords/skull","display_name":"Skull","score":0.7901021838188171},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6564871072769165},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6487076282501221},{"id":"https://openalex.org/keywords/ultrasound","display_name":"Ultrasound","score":0.5585482716560364},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5354210734367371},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.5027801990509033},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4717717170715332},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3546111583709717},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.2147766649723053},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.204058438539505},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.13148841261863708}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.820138692855835},{"id":"https://openalex.org/C2779300802","wikidata":"https://www.wikidata.org/wiki/Q13147","display_name":"Skull","level":2,"score":0.7901021838188171},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6564871072769165},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6487076282501221},{"id":"https://openalex.org/C143753070","wikidata":"https://www.wikidata.org/wiki/Q162564","display_name":"Ultrasound","level":2,"score":0.5585482716560364},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5354210734367371},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.5027801990509033},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4717717170715332},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3546111583709717},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.2147766649723053},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.204058438539505},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.13148841261863708}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2607371","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2607371","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling","raw_type":"proceedings-article"},{"id":"pmh:oai:EVASTAR-Karlsruhe.de:1000148095","is_oa":false,"landing_page_url":"https://publikationen.bibliothek.kit.edu/1000148095","pdf_url":null,"source":{"id":"https://openalex.org/S4306401992","display_name":"Repository KITopen (Karlsruhe Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I102335020","host_organization_name":"Karlsruhe Institute of Technology","host_organization_lineage":["https://openalex.org/I102335020"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"ISSN: 1605-7422","raw_type":"doc-type:conferenceObject"},{"id":"doi:10.5445/ir/1000148095","is_oa":true,"landing_page_url":"https://doi.org/10.5445/ir/1000148095","pdf_url":null,"source":{"id":"https://openalex.org/S7407052948","display_name":"KITopen","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.5445/ir/1000148095","is_oa":true,"landing_page_url":"https://doi.org/10.5445/ir/1000148095","pdf_url":null,"source":{"id":"https://openalex.org/S7407052948","display_name":"KITopen","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},"sustainable_development_goals":[{"score":0.46000000834465027,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1989532447","https://openalex.org/W2001412060","https://openalex.org/W2021719678","https://openalex.org/W2063322369","https://openalex.org/W2109553965","https://openalex.org/W2111876935","https://openalex.org/W2115362657","https://openalex.org/W2133059825","https://openalex.org/W2162473564","https://openalex.org/W2203865302","https://openalex.org/W2791427514","https://openalex.org/W2887798435","https://openalex.org/W2901434856","https://openalex.org/W2911358444","https://openalex.org/W3092131388","https://openalex.org/W3213374527","https://openalex.org/W4212991200","https://openalex.org/W4256188663","https://openalex.org/W6684227437","https://openalex.org/W6741689889"],"related_works":["https://openalex.org/W1996993591","https://openalex.org/W2020061871","https://openalex.org/W2424073895","https://openalex.org/W2368943772","https://openalex.org/W2049611277","https://openalex.org/W2367972372","https://openalex.org/W91146296","https://openalex.org/W2144744678","https://openalex.org/W2068774814","https://openalex.org/W1522196789"],"abstract_inverted_index":{"For":[0,22],"opening":[1],"the":[2,37,67,87,90,97,101,105,117,148,153,160,166,173,184,203],"blood":[3],"brain":[4,41,88,106,149],"barrier":[5],"using":[6,78,89,100],"focused":[7],"ultrasound":[8,204],"(FUS)":[9],"to":[10,34,65,112],"treat":[11],"neurodegenerative":[12],"diseases,":[13],"mouse-":[14],"specific":[15],"therapy":[16,24],"planning":[17,25],"is":[18,47,123,175],"an":[19,168],"essential":[20],"step.":[21],"our":[23,189],"approach":[26],"based":[27,171,192],"on":[28,139,172,193],"acoustic":[29,169],"simulations":[30],"we":[31],"here":[32],"propose":[33],"automatically":[35],"segment":[36],"mouse":[38],"skull":[39,76,98,119,155,161],"and":[40,70,81,108,157,195],"from":[42,116],"magnetic":[43],"resonance":[44],"imaging,":[45],"which":[46,177],"usually":[48],"used":[49],"in":[50,179],"combination":[51],"with":[52,125,130,199],"FUS":[53],"for":[54,147,152,159,164],"monitoring":[55],"purposes.":[56],"The":[57,121,133],"proposed":[58],"method":[59,122,191],"consists":[60],"of":[61,86,96,142,183,202],"(1)":[62],"pre-":[63],"processing":[64],"enhance":[66],"image":[68],"contrast":[69],"remove":[71,113],"noise,":[72],"(2)":[73],"a":[74,110,180],"rough":[75],"segmentation":[77,85,99,156,174],"morphological":[79],"operations":[80],"adaptive":[82],"binarization,":[83],"(3)":[84],"established":[91],"3D-PCNN":[92],"method,":[93],"(4)":[94],"correction":[95],"anatomical":[102],"information":[103],"about":[104],"location":[107],"(5)":[109],"post-processing":[111],"obvious":[114],"errors":[115],"final":[118],"segmentation.":[120],"evaluated":[124],"four":[126,143],"in-vivo":[127],"datasets":[128,144],"obtained":[129],"different":[131],"parameters.":[132],"median":[134],"Matthews":[135],"Correlation":[136],"Coefficient":[137],"(MCC)":[138],"all":[140],"slices":[141],"was":[145],"0.85":[146],"segmentation,":[150],"0.69":[151],"overall":[154],"0.78":[158],"cap.":[162],"Finally":[163],"showcasing":[165],"application":[167],"simulation":[170],"presented,":[176],"results":[178],"comparable":[181],"prediction":[182,187],"pressure":[185],"field":[186],"as":[188],"earlier":[190],"micro-CT,":[194],"lines":[196],"up":[197],"well":[198],"literature":[200],"estimations":[201],"attenuation.":[205]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
