{"id":"https://openalex.org/W3131844474","doi":"https://doi.org/10.1117/12.2582045","title":"Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery","display_name":"Graph-based analysis of mass spectrometry data for tissue characterization with application in basal cell carcinoma surgery","publication_year":2021,"publication_date":"2021-02-12","ids":{"openalex":"https://openalex.org/W3131844474","doi":"https://doi.org/10.1117/12.2582045","mag":"3131844474"},"language":"en","primary_location":{"id":"doi:10.1117/12.2582045","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2582045","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008717552","display_name":"Faranak Akbarifar","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Faranak Akbarifar","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002749573","display_name":"Amoon Jamzad","orcid":"https://orcid.org/0000-0002-0828-4365"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Amoon Jamzad","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022874103","display_name":"Alice Santilli","orcid":"https://orcid.org/0000-0001-5206-1727"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alice Santilli","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040568643","display_name":"Martin Kauffman","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Martin Kauffman","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020076569","display_name":"Natasja Janssen","orcid":"https://orcid.org/0000-0002-1704-1891"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Natasja Janssen","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046717505","display_name":"Laura Connolly","orcid":"https://orcid.org/0009-0005-8675-160X"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Laura Connolly","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026941433","display_name":"Kevin Ren","orcid":"https://orcid.org/0000-0002-3841-591X"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kevin Y. M. Ren","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103092144","display_name":"Kaitlin Vanderbeck","orcid":"https://orcid.org/0000-0003-4552-8151"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kaitlin Vanderbeck","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086688312","display_name":"Ami Wang","orcid":"https://orcid.org/0000-0002-4143-2657"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ami Wang","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103955537","display_name":"Doug McKay","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Doug Mckay","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108724892","display_name":"John F. Rudan","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"John Rudan","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084753910","display_name":"G\u00e1bor Fichtinger","orcid":"https://orcid.org/0000-0002-6354-262X"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gabor Fichtinger","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040401197","display_name":"Parvin Mousavi","orcid":"https://orcid.org/0000-0002-1630-7379"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Parvin Mousavi","raw_affiliation_strings":["Queen's Univ. (Canada)"],"affiliations":[{"raw_affiliation_string":"Queen's Univ. (Canada)","institution_ids":["https://openalex.org/I204722609"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5008717552"],"corresponding_institution_ids":["https://openalex.org/I204722609"],"apc_list":null,"apc_paid":null,"fwci":0.3218,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54510025,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"35","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.965399980545044,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11306","display_name":"Nonmelanoma Skin Cancer Studies","score":0.9645000100135803,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5925894379615784},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5665680170059204},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.546261191368103},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4864034950733185},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.4855005741119385},{"id":"https://openalex.org/keywords/margin","display_name":"Margin (machine learning)","score":0.4562585949897766},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43745312094688416},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2577090561389923},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.21192651987075806},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.10061526298522949},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.09194108843803406}],"concepts":[{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5925894379615784},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5665680170059204},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.546261191368103},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4864034950733185},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.4855005741119385},{"id":"https://openalex.org/C774472","wikidata":"https://www.wikidata.org/wiki/Q6760393","display_name":"Margin (machine learning)","level":2,"score":0.4562585949897766},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43745312094688416},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2577090561389923},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.21192651987075806},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.10061526298522949},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.09194108843803406}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2582045","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2582045","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3125011624","https://openalex.org/W1508631387","https://openalex.org/W2370917603","https://openalex.org/W2952760143","https://openalex.org/W2017776670","https://openalex.org/W2347897961","https://openalex.org/W2979236518","https://openalex.org/W2358318464","https://openalex.org/W2340870721","https://openalex.org/W3091955004"],"abstract_inverted_index":{"<strong>PURPOSE:</strong>":[0],"Basal":[1],"Cell":[2],"Carcinoma":[3],"(BCC)":[4],"is":[5,14,21,79,110,132,168,210],"the":[6,11,15,25,33,48,71,80,85,125,172,188,191,213,224,227],"most":[7],"common":[8],"cancer":[9,51,88,179,243],"in":[10,107,139,193],"world.":[12],"Surgery":[13],"standard":[16],"treatment":[17],"and":[18,46,122,145,152,180],"margin":[19,240],"assessment":[20,241],"used":[22,106,218],"to":[23,69,83,156,176,212],"evaluate":[24],"outcome.":[26],"The":[27,104,165,183,198,221],"presence":[28],"of":[29,35,50,87,113,127,136,190,201,226,231],"cancerous":[30],"cells":[31],"at":[32],"edge":[34],"resected":[36,100],"tissue":[37,236],"i.e.,":[38],"positive":[39],"margin,":[40],"can":[41,61],"negatively":[42],"impact":[43],"patient":[44],"outcomes":[45],"increase":[47],"probability":[49],"recurrence.":[52],"Novel":[53],"mass":[54,96,159,194,232],"spectrometry":[55,97,233],"technologies":[56],"paired":[57],"with":[58,64,124,187,203],"machine":[59],"learning":[60],"provide":[62],"surgeons":[63],"real-time":[65,239],"feedback":[66],"about":[67],"margins":[68],"eliminate":[70],"need":[72],"for":[73,235],"resurgery.":[74],"To":[75],"our":[76,120],"knowledge,":[77],"this":[78,108,140],"first":[81],"study":[82,109],"report":[84],"performance":[86,200],"detection":[89],"using":[90],"Graph":[91],"Convolutional":[92],"Networks":[93],"(GCN)":[94],"on":[95,171],"data":[98,117,208,234],"from":[99],"BCC":[101,147],"samples.":[102,148],"<strong>METHODS:</strong>":[103],"dataset":[105],"a":[111,128,133,162],"subset":[112],"an":[114],"ongoing":[115],"clinical":[116],"acquired":[118],"by":[119],"group":[121],"annotated":[123],"help":[126],"trained":[129],"pathologist.":[130],"There":[131],"total":[134],"number":[135],"190":[137],"spectra":[138,195],"dataset,":[141],"including":[142],"127":[143],"normal":[144,181],"63":[146],"We":[149],"propose":[150],"single-layer":[151],"multi-layer":[153,204],"conversion":[154],"methods":[155],"represent":[157],"each":[158],"spectrum":[160],"as":[161],"structured":[163],"graph.":[164],"graph":[166],"classifier":[167],"developed":[169],"based":[170],"deep":[173],"GCN":[174,202],"structure":[175],"distinguish":[177],"between":[178],"spectra.":[182],"results":[184,222],"are":[185],"compared":[186],"state":[189],"art":[192],"analysis.":[196],"<strong>RESULTS:</strong>":[197],"classification":[199],"representation":[205],"without":[206],"any":[207],"augmentation":[209],"comparable":[211],"previous":[214],"studies":[215],"that":[216],"have":[217],"augmentation.":[219],"<strong>CONCLUSION:</strong>":[220],"indicate":[223],"capability":[225],"proposed":[228],"graph-based":[229],"analysis":[230],"characterization":[237],"or":[238],"during":[242],"surgery.":[244]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
