{"id":"https://openalex.org/W3129218731","doi":"https://doi.org/10.1117/12.2579735","title":"An automatic diagnosis of idiopathic pulmonary fibrosis (IPF) using domain knowledge-guided attention models in HRCT images","display_name":"An automatic diagnosis of idiopathic pulmonary fibrosis (IPF) using domain knowledge-guided attention models in HRCT images","publication_year":2021,"publication_date":"2021-02-12","ids":{"openalex":"https://openalex.org/W3129218731","doi":"https://doi.org/10.1117/12.2579735","mag":"3129218731"},"language":"en","primary_location":{"id":"doi:10.1117/12.2579735","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2579735","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2021: Computer-Aided Diagnosis","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103250520","display_name":"Wenxi Yu","orcid":"https://orcid.org/0000-0003-4893-9618"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Wenxi Yu","raw_affiliation_strings":["Univ. of California, Los Angeles (United States)"],"affiliations":[{"raw_affiliation_string":"Univ. of California, Los Angeles (United States)","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060348530","display_name":"Hua Zhou","orcid":"https://orcid.org/0000-0003-1320-7118"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Zhou","raw_affiliation_strings":["Univ. of California, Los Angeles (United States)"],"affiliations":[{"raw_affiliation_string":"Univ. of California, Los Angeles (United States)","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049494501","display_name":"Youngwon Choi","orcid":"https://orcid.org/0000-0003-1120-6218"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Youngwon Choi","raw_affiliation_strings":["Seoul National Univ. (Korea, Republic of)"],"affiliations":[{"raw_affiliation_string":"Seoul National Univ. (Korea, Republic of)","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045343022","display_name":"Jonathan Goldin","orcid":"https://orcid.org/0000-0003-3007-9947"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan G. Goldin","raw_affiliation_strings":["Univ. of California, Los Angeles (United States)"],"affiliations":[{"raw_affiliation_string":"Univ. of California, Los Angeles (United States)","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082804637","display_name":"Pang-yu Teng","orcid":null},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pangyu Teng","raw_affiliation_strings":["Univ. of California, Los Angeles (United States)"],"affiliations":[{"raw_affiliation_string":"Univ. of California, Los Angeles (United States)","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066683966","display_name":"Grace Hyun J. Kim","orcid":"https://orcid.org/0000-0003-1225-3489"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grace Hyun J. Kim","raw_affiliation_strings":["Univ. of California, Los Angeles (United States)"],"affiliations":[{"raw_affiliation_string":"Univ. of California, Los Angeles (United States)","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103250520"],"corresponding_institution_ids":["https://openalex.org/I161318765"],"apc_list":null,"apc_paid":null,"fwci":0.2749,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54032392,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"67","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.8932999968528748,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.8932999968528748,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10870","display_name":"Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis","score":0.883899986743927,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/idiopathic-pulmonary-fibrosis","display_name":"Idiopathic pulmonary fibrosis","score":0.7569833397865295},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6139700412750244},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4781266748905182},{"id":"https://openalex.org/keywords/pulmonary-fibrosis","display_name":"Pulmonary fibrosis","score":0.4724476933479309},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.4294894337654114},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42140230536460876},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.35814565420150757},{"id":"https://openalex.org/keywords/fibrosis","display_name":"Fibrosis","score":0.3080762028694153},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.22372153401374817},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.15629947185516357}],"concepts":[{"id":"https://openalex.org/C2778341716","wikidata":"https://www.wikidata.org/wiki/Q2290446","display_name":"Idiopathic pulmonary fibrosis","level":3,"score":0.7569833397865295},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6139700412750244},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4781266748905182},{"id":"https://openalex.org/C2781244666","wikidata":"https://www.wikidata.org/wiki/Q32446","display_name":"Pulmonary fibrosis","level":3,"score":0.4724476933479309},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.4294894337654114},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42140230536460876},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.35814565420150757},{"id":"https://openalex.org/C2780559512","wikidata":"https://www.wikidata.org/wiki/Q605709","display_name":"Fibrosis","level":2,"score":0.3080762028694153},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.22372153401374817},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.15629947185516357},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2579735","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2579735","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2021: Computer-Aided Diagnosis","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4310329733","https://openalex.org/W4282914037","https://openalex.org/W2990844666","https://openalex.org/W2419389033","https://openalex.org/W3159320378","https://openalex.org/W3014745437","https://openalex.org/W4309181476","https://openalex.org/W2743918347","https://openalex.org/W4372342327","https://openalex.org/W2078658994"],"abstract_inverted_index":{"Two":[0],"major":[1],"challenges":[2],"hinder":[3],"the":[4,13,21,37,64,75,83,137,140,153,166,172,181,205,217],"deployment":[5],"of":[6,23,70,85,169,207,219],"deep":[7,76,220],"learning-based":[8,77],"systems":[9,222],"into":[10,204],"clinical":[11],"practice:":[12],"need":[14],"for":[15,55],"numerous":[16],"high-quality":[17],"well-labeled":[18],"data":[19],"and":[20,41,63,126],"lack":[22,162],"explainability.":[24,44,183],"Attention":[25],"models,":[26],"originated":[27],"from":[28],"natural":[29],"language":[30],"processing,":[31],"have":[32],"been":[33],"popular":[34],"to":[35,80,95],"address":[36],"label":[38],"scarcity":[39],"problem":[40],"encourage":[42],"model":[43,54,79,156,175,182,192,210],"In":[45],"this":[46],"work,":[47],"we":[48],"developed":[49],"a":[50],"domain":[51,66,202],"knowledge-guided":[52],"attention":[53,72,225],"disease":[56,108],"diagnosis":[57,78,155,174,191,209],"with":[58,98,105,180],"only":[59,194],"coarse":[60],"scan-level":[61,196],"labels":[62],"population-level":[65,201],"knowledge.":[67],"The":[68,91,131],"use":[69],"guided":[71],"models":[73],"encourages":[74],"focus":[81],"on":[82],"area":[84,138],"interests":[86],"in":[87,211],"an":[88,111,189,212],"end-to-end":[89,213],"manner.":[90],"research":[92],"interest":[93],"is":[94],"diagnose":[96],"subjects":[97,104],"idiopathic":[99],"pulmonary":[100],"fibrosis":[101],"(IPF)":[102],"among":[103],"interstitial":[106],"lung":[107],"(ILD)":[109],"using":[110],"axial":[112],"chest":[113],"high":[114],"resolution":[115],"computed":[116],"tomography":[117],"(HRCT)":[118],"scan.":[119],"Our":[120,184],"dataset":[121],"contains":[122],"279":[123],"IPF":[124,154,173,190,208],"patients":[125],"423":[127],"non-IPF":[128],"ILD":[129],"patients.":[130],"network\u2019s":[132],"performance":[133,159,177],"was":[134],"evaluated":[135],"by":[136,223],"under":[139],"receiver":[141],"operating":[142],"characteristic":[143],"curve":[144],"(AUC).":[145],"We":[146],"observe":[147],"that":[148,193],"without":[149],"attention-based":[150,170],"loss":[151],"function,":[152],"reaches":[157],"satisfactory":[158],"(AUC=0.972),":[160],"but":[161],"explainability;":[163],"when":[164],"increasing":[165],"relative":[167],"importance":[168],"loss,":[171],"increases":[176],"(AUC=0.988),":[178],"along":[179],"contributions":[185],"are":[186],"(1)":[187],"developing":[188],"uses":[195],"weak":[197],"supervision;":[198],"(2)":[199],"incorporating":[200],"knowledge":[203],"training":[206],"manner;":[214],"(3)":[215],"enhancing":[216],"explainability":[218],"learning":[221],"introducing":[224],"mechanisms.":[226]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
