{"id":"https://openalex.org/W3011459661","doi":"https://doi.org/10.1117/12.2549857","title":"Segmenting retinal OCT images with inter-B-scan and longitudinal information","display_name":"Segmenting retinal OCT images with inter-B-scan and longitudinal information","publication_year":2020,"publication_date":"2020-03-10","ids":{"openalex":"https://openalex.org/W3011459661","doi":"https://doi.org/10.1117/12.2549857","mag":"3011459661"},"language":"en","primary_location":{"id":"doi:10.1117/12.2549857","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2549857","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Image Processing","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102852563","display_name":"Yufan He","orcid":"https://orcid.org/0000-0003-4095-9104"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yufan He","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075622613","display_name":"Aaron Carass","orcid":"https://orcid.org/0000-0003-4939-5085"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Carass","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100696070","display_name":"Yihao Liu","orcid":"https://orcid.org/0000-0002-2654-9793"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yihao Liu","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056779462","display_name":"Angeliki Filippatou","orcid":"https://orcid.org/0000-0003-0419-233X"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Angeliki Filippatou","raw_affiliation_strings":["The Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036011059","display_name":"Bruno Jedynak","orcid":"https://orcid.org/0000-0002-0824-5745"},"institutions":[{"id":"https://openalex.org/I126345244","display_name":"Portland State University","ror":"https://ror.org/00yn2fy02","country_code":"US","type":"education","lineage":["https://openalex.org/I126345244"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruno M. Jedynak","raw_affiliation_strings":["Portland State Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Portland State Univ. (United States)","institution_ids":["https://openalex.org/I126345244"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065248584","display_name":"Sharon D. Solomon","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharon D. Solomon","raw_affiliation_strings":["Wilmer Eye Institute, The Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wilmer Eye Institute, The Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052025260","display_name":"Shiv Saidha","orcid":"https://orcid.org/0000-0001-6387-0714"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiv Saidha","raw_affiliation_strings":["The Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061851273","display_name":"Peter A. Calabresi","orcid":"https://orcid.org/0000-0002-7776-6472"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter A. Calabresi","raw_affiliation_strings":["The Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066682675","display_name":"Jerry L. Prince","orcid":"https://orcid.org/0000-0002-6553-0876"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jerry L. Prince","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"119","last_page":"119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12599","display_name":"Retinal and Optic Conditions","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11569","display_name":"Optical Coherence Tomography Applications","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/optical-coherence-tomography","display_name":"Optical coherence tomography","score":0.8369507789611816},{"id":"https://openalex.org/keywords/retinal","display_name":"Retinal","score":0.7610889673233032},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7124398946762085},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6898537278175354},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6714539527893066},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5679527521133423},{"id":"https://openalex.org/keywords/fundus","display_name":"Fundus (uterus)","score":0.5456250309944153},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5354995727539062},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.46967560052871704},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37327414751052856},{"id":"https://openalex.org/keywords/ophthalmology","display_name":"Ophthalmology","score":0.14732575416564941},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1157478392124176},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.07223254442214966}],"concepts":[{"id":"https://openalex.org/C2778818243","wikidata":"https://www.wikidata.org/wiki/Q899552","display_name":"Optical coherence tomography","level":2,"score":0.8369507789611816},{"id":"https://openalex.org/C2780827179","wikidata":"https://www.wikidata.org/wiki/Q422001","display_name":"Retinal","level":2,"score":0.7610889673233032},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7124398946762085},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6898537278175354},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6714539527893066},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5679527521133423},{"id":"https://openalex.org/C2776391266","wikidata":"https://www.wikidata.org/wiki/Q9612","display_name":"Fundus (uterus)","level":2,"score":0.5456250309944153},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5354995727539062},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.46967560052871704},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37327414751052856},{"id":"https://openalex.org/C118487528","wikidata":"https://www.wikidata.org/wiki/Q161437","display_name":"Ophthalmology","level":1,"score":0.14732575416564941},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1157478392124176},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.07223254442214966},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2549857","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2549857","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Image Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2323668004","https://openalex.org/W2348498086","https://openalex.org/W3093461874","https://openalex.org/W2063232638","https://openalex.org/W1000914229","https://openalex.org/W3021342607","https://openalex.org/W2488331324","https://openalex.org/W1014602304","https://openalex.org/W1033756233","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Monitoring":[0],"retinal":[1,18,33,50,115],"thickness":[2,19],"of":[3,52,117],"persons":[4],"with":[5,54,82,98],"multiple":[6],"sclerosis":[7],"(MS)":[8],"provides":[9],"important":[10],"bio-markers":[11],"for":[12,37,45,70],"disease":[13],"progression.":[14],"However,":[15],"changes":[16,51],"in":[17,27],"can":[20],"be":[21],"small":[22],"and":[23,64,94,111],"concealed":[24],"by":[25],"noise":[26],"the":[28,47,113,118,127],"acquired":[29],"data.":[30],"Consistent":[31],"longitudinal":[32,49,71,105],"layer":[34],"segmentation":[35,68],"methods":[36],"optical":[38],"coherence":[39],"tomography":[40],"(OCT)":[41],"images":[42],"are":[43,79],"crucial":[44],"identifying":[46],"real":[48],"individuals":[53],"MS.":[55],"In":[56],"this":[57],"paper,":[58],"we":[59,86,107],"propose":[60],"an":[61],"iterative":[62],"registration":[63,110],"deep":[65,92],"learning":[66],"based":[67],"method":[69],"3D":[72,76],"OCT":[73,77],"scans.":[74],"Since":[75],"scans":[78],"usually":[80],"anisotropic":[81],"large":[83],"slice":[84],"separation,":[85],"extract":[87],"B-scan":[88],"features":[89],"using":[90],"2D":[91],"networks":[93],"utilize":[95],"inter-B-scan":[96],"context":[97],"convolutional":[99],"long-short-term":[100],"memory":[101],"(LSTM).":[102],"To":[103],"incorporate":[104],"information,":[106],"perform":[108],"fundus":[109],"interpolate":[112],"smooth":[114],"surfaces":[116],"previous":[119],"visit":[120],"to":[121],"use":[122],"as":[123],"a":[124],"prior":[125],"on":[126],"current":[128],"visit.":[129]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
