{"id":"https://openalex.org/W3012097108","doi":"https://doi.org/10.1117/12.2549588","title":"Compactness measures of tumor infiltrating lymphocytes in lung adenocarcinoma are associated with overall patient survival and immune scores","display_name":"Compactness measures of tumor infiltrating lymphocytes in lung adenocarcinoma are associated with overall patient survival and immune scores","publication_year":2020,"publication_date":"2020-03-16","ids":{"openalex":"https://openalex.org/W3012097108","doi":"https://doi.org/10.1117/12.2549588","mag":"3012097108"},"language":"en","primary_location":{"id":"doi:10.1117/12.2549588","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2549588","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Digital Pathology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024941785","display_name":"Ruiwen Ding","orcid":"https://orcid.org/0009-0003-0845-922X"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruiwen Ding","raw_affiliation_strings":["Case Western Reserve Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036343196","display_name":"Prateek Prasanna","orcid":"https://orcid.org/0000-0002-3068-3573"},"institutions":[{"id":"https://openalex.org/I1327163397","display_name":"State University of New York","ror":"https://ror.org/01q1z8k08","country_code":"US","type":"education","lineage":["https://openalex.org/I1327163397"]},{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prateek Prasanna","raw_affiliation_strings":["The State Univ. of New York at Stony Brook, (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The State Univ. of New York at Stony Brook, (United States)","institution_ids":["https://openalex.org/I1327163397","https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043558349","display_name":"Germ\u00e1n Corredor","orcid":"https://orcid.org/0000-0003-3002-0937"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Germ\u00e1n Corredor","raw_affiliation_strings":["Case Western Reserve Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024288211","display_name":"Cheng Lu","orcid":"https://orcid.org/0000-0002-7651-3924"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cheng Lu","raw_affiliation_strings":["Case Western Reserve Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057391316","display_name":"Priya Velu","orcid":"https://orcid.org/0000-0003-1652-5971"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Priya Velu","raw_affiliation_strings":["Weill Cornell Medical College (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Weill Cornell Medical College (United States)","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024523838","display_name":"Khoi U. Le","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khoi Le","raw_affiliation_strings":["Case Western Reserve Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017466934","display_name":"Patrick Leo","orcid":"https://orcid.org/0000-0002-2248-0610"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Leo","raw_affiliation_strings":["Case Western Reserve Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079122373","display_name":"Niha Beig","orcid":"https://orcid.org/0000-0002-1150-5886"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Niha G. Beig","raw_affiliation_strings":["Case Western Reserve University, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, United States","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066861614","display_name":"Vamsidhar Velcheti","orcid":"https://orcid.org/0000-0002-6589-0759"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vamsidhar Velcheti","raw_affiliation_strings":["New York Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York Univ. (United States)","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027326018","display_name":"David L. Rimm","orcid":"https://orcid.org/0000-0001-5820-4397"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Rimm","raw_affiliation_strings":["Yale Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Yale Univ. (United States)","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039115208","display_name":"Kurt A. Schalper","orcid":"https://orcid.org/0000-0001-5692-4833"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kurt Schalper","raw_affiliation_strings":["Yale Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Yale Univ. (United States)","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027642699","display_name":"Anant Madabhushi","orcid":"https://orcid.org/0000-0002-5741-0399"},"institutions":[{"id":"https://openalex.org/I4210110978","display_name":"Louis Stokes Cleveland VA Medical Center","ror":"https://ror.org/01vrybr67","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210110978","https://openalex.org/I4210127612"]},{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anant Madabhushi","raw_affiliation_strings":["Case Western Reserve Univ. (United States)","Louis Stokes Cleveland Veterans Administration Medical Ctr. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Louis Stokes Cleveland Veterans Administration Medical Ctr. (United States)","institution_ids":["https://openalex.org/I4210110978"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.139,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.85788305,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.737409234046936},{"id":"https://openalex.org/keywords/hazard-ratio","display_name":"Hazard ratio","score":0.6104779243469238},{"id":"https://openalex.org/keywords/tumor-infiltrating-lymphocytes","display_name":"Tumor-infiltrating lymphocytes","score":0.6096344590187073},{"id":"https://openalex.org/keywords/adenocarcinoma","display_name":"Adenocarcinoma","score":0.5663954019546509},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.528667688369751},{"id":"https://openalex.org/keywords/survival-analysis","display_name":"Survival analysis","score":0.4975750744342804},{"id":"https://openalex.org/keywords/biopsy","display_name":"Biopsy","score":0.484855055809021},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.46258044242858887},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.39231887459754944},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3609282374382019},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3429202437400818},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3354911804199219},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.33249855041503906},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2689652442932129},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.24791201949119568},{"id":"https://openalex.org/keywords/confidence-interval","display_name":"Confidence interval","score":0.13141730427742004}],"concepts":[{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.737409234046936},{"id":"https://openalex.org/C207103383","wikidata":"https://www.wikidata.org/wiki/Q3930246","display_name":"Hazard ratio","level":3,"score":0.6104779243469238},{"id":"https://openalex.org/C2778326572","wikidata":"https://www.wikidata.org/wiki/Q7852668","display_name":"Tumor-infiltrating lymphocytes","level":4,"score":0.6096344590187073},{"id":"https://openalex.org/C2781182431","wikidata":"https://www.wikidata.org/wiki/Q356033","display_name":"Adenocarcinoma","level":3,"score":0.5663954019546509},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.528667688369751},{"id":"https://openalex.org/C10515644","wikidata":"https://www.wikidata.org/wiki/Q543310","display_name":"Survival analysis","level":2,"score":0.4975750744342804},{"id":"https://openalex.org/C2775934546","wikidata":"https://www.wikidata.org/wiki/Q179991","display_name":"Biopsy","level":2,"score":0.484855055809021},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.46258044242858887},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.39231887459754944},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3609282374382019},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3429202437400818},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3354911804199219},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.33249855041503906},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2689652442932129},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.24791201949119568},{"id":"https://openalex.org/C44249647","wikidata":"https://www.wikidata.org/wiki/Q208498","display_name":"Confidence interval","level":2,"score":0.13141730427742004}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2549588","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2549588","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Digital Pathology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8299999833106995,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3213778696","https://openalex.org/W2027570649","https://openalex.org/W2883017972","https://openalex.org/W1967738824","https://openalex.org/W3046070657","https://openalex.org/W2980988258","https://openalex.org/W2327846462","https://openalex.org/W1986260198","https://openalex.org/W3035769840","https://openalex.org/W2154948599"],"abstract_inverted_index":{"Lung":[0],"adenocarcinoma":[1],"(LUAD),":[2],"the":[3,34,45,125,205,214,236],"most":[4,126],"common":[5],"type":[6],"of":[7,16,36,52,58,77,91,140,148,177,186,228],"lung":[8],"cancer,":[9],"has":[10,26],"an":[11],"average":[12],"5-year":[13],"survival":[14,151],"rate":[15],"15%.":[17],"In":[18,95],"LUAD,":[19],"interaction":[20],"between":[21,47],"tumor":[22],"and":[23,39,50,93,112,116,136,153,161,218,238,253],"immune":[24,69,159,165,201,243],"cells":[25,92],"been":[27,72],"shown":[28],"to":[29,74,123,212,242],"be":[30,75],"highly":[31],"associated":[32],"with":[33,56,158,235],"likelihood":[35,57],"disease":[37],"progression":[38],"metastases.":[40],"We":[41,132,172],"have":[42,71],"previously":[43],"demonstrated":[44],"association":[46],"spatial":[48],"architecture":[49],"arrangement":[51],"tumor-infiltrating":[53],"lymphocytes":[54],"(TILs)":[55],"recurrence":[59],"in":[60,204],"early":[61],"stage":[62],"NSCLC.":[63],"Recently,":[64],"gene":[65],"set":[66,176],"enrichment":[67,169],"analysis-derived":[68],"scores":[70,160,183],"found":[73,173],"prognostic":[76,147,185,227],"outcome.":[78],"However,":[79],"this":[80,96],"requires":[81],"transcriptomics":[82],"techniques":[83],"as":[84,209],"a":[85,210],"precursor,":[86],"which":[87],"involves":[88],"mechanical":[89],"disruption":[90],"tissues.":[94],"work":[97],"(N":[98],"=":[99,191,194,197],"170),":[100],"we":[101],"extracted":[102],"graph-based":[103],"histomorphometric":[104,138],"features":[105],"on":[106],"segmented":[107],"nuclei":[108,142],"from":[109,129],"digitized":[110],"H":[111],"E":[113],"biopsy":[114],"images":[115],"then":[117,133],"performed":[118],"principal":[119],"component":[120],"analysis":[121,170],"(PCA)":[122],"select":[124],"representative":[127],"tiles":[128],"each":[130],"patient.":[131],"identified":[134],"TILs":[135],"quantitative":[137],"attributes":[139],"different":[141],"groups":[143],"(all-nuclei,":[144],"TILs,":[145],"non-TILs)":[146],"overall":[149],"patient":[150],"(OS)":[152],"further":[154],"investigated":[155],"their":[156],"associations":[157],"biological":[162,239],"pathways":[163,240],"implicated":[164],"response":[166,244],"using":[167],"gene-set":[168],"(GSEA).":[171],"TIL-compactness":[174],"(a":[175],"TIL":[178,224],"density":[179],"features)":[180],"derived":[181],"risk":[182],"were":[184,230],"OS":[187,229],"(Hazard":[188],"Ratio":[189],"(HR)":[190],"3.26,":[192],"p":[193],"0.012,":[195],"C-index":[196],"0.634).":[198],"The":[199,223],"median":[200],"score":[202],"(IS)":[203],"cohort":[206],"was":[207],"used":[208],"threshold":[211],"divide":[213],"cases":[215],"into":[216],"low":[217],"high":[219],"IS":[220,237],"expression":[221],"groups.":[222],"compactness":[225],"measures":[226],"also":[231],"statistically":[232],"significantly":[233],"correlated":[234],"related":[241],"(Immune":[245],"System":[246],"Process,":[247],"Immune":[248,251,255],"Response,":[249,252],"Adaptive":[250],"Humoral":[254],"Response":[256],"Mediated":[257],"by":[258],"Circulating":[259],"Immunoglobulin).":[260]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
