{"id":"https://openalex.org/W3012465107","doi":"https://doi.org/10.1117/12.2549016","title":"Segmentation of mycobacterium tuberculosis bacilli clusters from acid-fast stained lung biopsies: a deep learning approach","display_name":"Segmentation of mycobacterium tuberculosis bacilli clusters from acid-fast stained lung biopsies: a deep learning approach","publication_year":2020,"publication_date":"2020-03-16","ids":{"openalex":"https://openalex.org/W3012465107","doi":"https://doi.org/10.1117/12.2549016","mag":"3012465107"},"language":"en","primary_location":{"id":"doi:10.1117/12.2549016","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2549016","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Digital Pathology","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045373968","display_name":"Thomas E. Tavolara","orcid":"https://orcid.org/0000-0001-6455-3120"},"institutions":[{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas E. Tavolara","raw_affiliation_strings":["Wake Forest School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wake Forest School of Medicine (United States)","institution_ids":["https://openalex.org/I47251452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112514849","display_name":"Khalid M. K. Niazi","orcid":null},"institutions":[{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khalid M. K. Niazi","raw_affiliation_strings":["Wake Forest School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wake Forest School of Medicine (United States)","institution_ids":["https://openalex.org/I47251452"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010025683","display_name":"Gillian Beamer","orcid":"https://orcid.org/0000-0001-6782-4424"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gillian Beamer","raw_affiliation_strings":["Tufts Univ. Cummings School of Veterinary Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tufts Univ. Cummings School of Veterinary Medicine (United States)","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077316017","display_name":"Metin N. G\u00fcrcan","orcid":"https://orcid.org/0000-0002-2421-8229"},"institutions":[{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Metin N. Gurcan","raw_affiliation_strings":["Wake Forest School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wake Forest School of Medicine (United States)","institution_ids":["https://openalex.org/I47251452"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0847,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.74073815,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"13","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.8405369520187378},{"id":"https://openalex.org/keywords/bacilli","display_name":"Bacilli","score":0.8108001947402954},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.8005049228668213},{"id":"https://openalex.org/keywords/acid-fast","display_name":"Acid-fast","score":0.7196673154830933},{"id":"https://openalex.org/keywords/mycobacterium","display_name":"Mycobacterium","score":0.49561870098114014},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.46909937262535095},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4530309736728668},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3531706631183624},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34804660081863403},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3424525558948517},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.33978891372680664},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1497955024242401},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.13112768530845642},{"id":"https://openalex.org/keywords/sputum","display_name":"Sputum","score":0.12279880046844482}],"concepts":[{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.8405369520187378},{"id":"https://openalex.org/C2776870249","wikidata":"https://www.wikidata.org/wiki/Q149128","display_name":"Bacilli","level":3,"score":0.8108001947402954},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.8005049228668213},{"id":"https://openalex.org/C101077360","wikidata":"https://www.wikidata.org/wiki/Q3278217","display_name":"Acid-fast","level":4,"score":0.7196673154830933},{"id":"https://openalex.org/C2780374374","wikidata":"https://www.wikidata.org/wiki/Q194309","display_name":"Mycobacterium","level":3,"score":0.49561870098114014},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.46909937262535095},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4530309736728668},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3531706631183624},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34804660081863403},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3424525558948517},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.33978891372680664},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1497955024242401},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.13112768530845642},{"id":"https://openalex.org/C2776301714","wikidata":"https://www.wikidata.org/wiki/Q259346","display_name":"Sputum","level":3,"score":0.12279880046844482},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2549016","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2549016","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Digital Pathology","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2415816300","https://openalex.org/W150726857","https://openalex.org/W4231155142","https://openalex.org/W2038068671","https://openalex.org/W2353572908","https://openalex.org/W2734477874","https://openalex.org/W2972094210","https://openalex.org/W2397052940","https://openalex.org/W4308058527","https://openalex.org/W2413849264"],"abstract_inverted_index":{"Individual":[0],"factors":[1],"that":[2],"result":[3],"in":[4,18,21],"susceptibility":[5],"and":[6,44,66,118],"morbidity":[7],"due":[8],"to":[9,28,59,62,78,104,131],"Mycobacterium":[10,37,80],"tuberculosis":[11,38,42,81],"(M.tb)":[12],"infection":[13,39],"are":[14],"not":[15],"clearly":[16],"defined":[17],"humans":[19],"or":[20],"animal":[22],"models":[23],"of":[24,35,55,97,111,136],"disease.":[25],"This":[26],"leads":[27],"challenges":[29],"for":[30],"example,":[31],"differentiating":[32],"life-long":[33],"control":[34],"latent":[36],"from":[40,84,89],"active":[41,50],"disease":[43],"accurately":[45],"predicting":[46],"who":[47],"will":[48,128],"develop":[49],"tuberculosis.":[51],"As":[52],"a":[53,56,74,94],"part":[54],"larger":[57],"study":[58],"identify":[60],"biomarkers":[61],"differentiate":[63,132],"these":[64],"states":[65,135],"predict":[67],"long-term":[68],"clinical":[69,134],"outcomes,":[70],"here":[71],"we":[72],"present":[73],"deep":[75],"learning":[76],"approach":[77],"segment":[79,105],"bacilli":[82,106],"clusters":[83],"acid-fast":[85],"stained":[86],"lung":[87],"sections":[88],"experimentally":[90],"infected":[91],"mice.":[92],"In":[93,113],"4-fold":[95],"cross-validation":[96],"178":[98],"slides,":[99],"our":[100,126],"method":[101,127],"demonstrates":[102],"ability":[103],"with":[107,115,122],"median":[108],"dice":[109],"coefficient":[110],"0.8.":[112],"tandem":[114],"improved":[116],"segmentation":[117],"cluster":[119],"analysis":[120],"association":[121],"specific":[123],"anatomical":[124],"regions,":[125],"be":[129],"able":[130],"between":[133],"M.tb":[137],"infection.":[138]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
