{"id":"https://openalex.org/W2980996020","doi":"https://doi.org/10.1117/12.2548630","title":"Anatomically informed data augmentation for functional MRI with applications to deep learning","display_name":"Anatomically informed data augmentation for functional MRI with applications to deep learning","publication_year":2020,"publication_date":"2020-03-10","ids":{"openalex":"https://openalex.org/W2980996020","doi":"https://doi.org/10.1117/12.2548630","mag":"2980996020","pmid":"https://pubmed.ncbi.nlm.nih.gov/33767520"},"language":"en","primary_location":{"id":"doi:10.1117/12.2548630","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2548630","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Image Processing","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1910.08112","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071042824","display_name":"Kevin P. Nguyen","orcid":"https://orcid.org/0000-0001-5520-7285"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kevin P. Nguyen","raw_affiliation_strings":["University of Texas Southwestern Medical Center, Dallas, TX, USA","University of Texas-Southwestern Medical Center, Dallas, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"University of Texas-Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028368152","display_name":"Cherise Chin Fatt","orcid":null},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cherise Chin Fatt","raw_affiliation_strings":["University of Texas Southwestern Medical Center, Dallas, TX, USA","University of Texas-Southwestern Medical Center, Dallas, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"University of Texas-Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071375877","display_name":"Alex Treacher","orcid":"https://orcid.org/0000-0003-1314-7629"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex Treacher","raw_affiliation_strings":["University of Texas Southwestern Medical Center, Dallas, TX, USA","University of Texas-Southwestern Medical Center, Dallas, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"University of Texas-Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014599959","display_name":"Cooper Mellema","orcid":"https://orcid.org/0000-0001-8401-8889"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cooper Mellema","raw_affiliation_strings":["University of Texas Southwestern Medical Center, Dallas, TX, USA","University of Texas-Southwestern Medical Center, Dallas, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"University of Texas-Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081426855","display_name":"Madhukar H. Trivedi","orcid":"https://orcid.org/0000-0002-2983-1110"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madhukar H. Trivedi","raw_affiliation_strings":["University of Texas Southwestern Medical Center, Dallas, TX, USA","University of Texas-Southwestern Medical Center, Dallas, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"University of Texas-Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068432327","display_name":"Albert Montillo","orcid":"https://orcid.org/0000-0002-4353-290X"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Albert Montillo","raw_affiliation_strings":["University of Texas Southwestern Medical Center, Dallas, TX, USA","University of Texas-Southwestern Medical Center, Dallas, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Texas Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"University of Texas-Southwestern Medical Center, Dallas, TX, USA","institution_ids":["https://openalex.org/I867280407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5071042824"],"corresponding_institution_ids":["https://openalex.org/I867280407"],"apc_list":null,"apc_paid":null,"fwci":0.1175,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.47178922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"11313","issue":null,"first_page":"28","last_page":"28"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.741202175617218},{"id":"https://openalex.org/keywords/hyperparameter","display_name":"Hyperparameter","score":0.731480062007904},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6281412243843079},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6023402810096741},{"id":"https://openalex.org/keywords/functional-magnetic-resonance-imaging","display_name":"Functional magnetic resonance imaging","score":0.56596440076828},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.5607556104660034},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5405042171478271},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5231465101242065},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10410073399543762}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.741202175617218},{"id":"https://openalex.org/C8642999","wikidata":"https://www.wikidata.org/wiki/Q4171168","display_name":"Hyperparameter","level":2,"score":0.731480062007904},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6281412243843079},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6023402810096741},{"id":"https://openalex.org/C2779226451","wikidata":"https://www.wikidata.org/wiki/Q903809","display_name":"Functional magnetic resonance imaging","level":2,"score":0.56596440076828},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.5607556104660034},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5405042171478271},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5231465101242065},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10410073399543762},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1117/12.2548630","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2548630","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Image Processing","raw_type":"proceedings-article"},{"id":"pmid:33767520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33767520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:arXiv.org:1910.08112","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1910.08112","pdf_url":"https://arxiv.org/pdf/1910.08112","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2980996020","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/1910.08112","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7990266","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7990266","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},{"id":"doi:10.48550/arxiv.1910.08112","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1910.08112","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1910.08112","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1910.08112","pdf_url":"https://arxiv.org/pdf/1910.08112","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4000000059604645,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1913304673","https://openalex.org/W1970262118","https://openalex.org/W2122457251","https://openalex.org/W2298299786","https://openalex.org/W2738849673","https://openalex.org/W2791353294","https://openalex.org/W2804047946","https://openalex.org/W2952217990"],"related_works":["https://openalex.org/W3010971007","https://openalex.org/W3193234348","https://openalex.org/W3175155718","https://openalex.org/W2965889308","https://openalex.org/W2992511782","https://openalex.org/W3102814955","https://openalex.org/W2969913432","https://openalex.org/W3178390372","https://openalex.org/W3081850693","https://openalex.org/W2979830539","https://openalex.org/W3187941762","https://openalex.org/W3130503102","https://openalex.org/W2890581803","https://openalex.org/W3001221999","https://openalex.org/W2995844062","https://openalex.org/W2995576288","https://openalex.org/W3201428216","https://openalex.org/W3092864056","https://openalex.org/W2808121541","https://openalex.org/W2148835894"],"abstract_inverted_index":{"The":[0],"application":[1],"of":[2,84,140,146],"deep":[3],"learning":[4],"to":[5,55,110,125],"build":[6],"accurate":[7],"predictive":[8,152],"models":[9],"from":[10,89],"functional":[11,67],"neuroimaging":[12],"data":[13,22,31,147],"is":[14,78,122],"often":[15],"hindered":[16],"by":[17,60],"limited":[18],"dataset":[19],"sizes.":[20],"Though":[21],"augmentation":[23,32,112,121,148],"can":[24],"help":[25],"mitigate":[26],"such":[27,45],"training":[28],"obstacles,":[29],"most":[30],"methods":[33,113],"have":[34],"been":[35],"developed":[36],"for":[37,49,64,114,150],"natural":[38,115],"images":[39],"as":[40,46],"in":[41,57,98,100,154],"computer":[42],"vision":[43],"tasks":[44,155],"CIFAR,":[47],"not":[48],"medical":[50],"images.":[51,105,116],"This":[52,76,106],"work":[53],"helps":[54],"fills":[56],"this":[58],"gap":[59],"proposing":[61],"a":[62,81,95],"method":[63,77,149],"generating":[65],"new":[66],"Magnetic":[68],"Resonance":[69],"Images":[70],"(fMRI)":[71],"with":[72],"realistic":[73],"brain":[74],"morphology.":[75],"tested":[79],"on":[80],"challenging":[82],"task":[83],"predicting":[85,101],"antidepressant":[86],"treatment":[87],"response":[88,102],"pre-treatment":[90],"task-based":[91],"fMRI":[92],"and":[93,142],"demonstrates":[94],"26%":[96],"improvement":[97,107],"performance":[99,128,153],"using":[103,156],"augmented":[104],"compares":[108],"favorably":[109],"state-of-the-art":[111],"Through":[117],"an":[118],"ablative":[119],"test,":[120],"also":[123],"shown":[124],"substantively":[126],"improve":[127],"when":[129],"applied":[130],"before":[131],"hyperparameter":[132],"optimization.":[133],"These":[134],"results":[135],"suggest":[136],"the":[137,144],"optimal":[138],"order":[139],"operations":[141],"support":[143],"role":[145],"improving":[151],"fMRI.":[157]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-30T06:05:26.967640","created_date":"2025-10-10T00:00:00"}
