{"id":"https://openalex.org/W3012399666","doi":"https://doi.org/10.1117/12.2546004","title":"Anatomical labeling of human airway branches using a novel two-step machine learning and hierarchical features","display_name":"Anatomical labeling of human airway branches using a novel two-step machine learning and hierarchical features","publication_year":2020,"publication_date":"2020-03-10","ids":{"openalex":"https://openalex.org/W3012399666","doi":"https://doi.org/10.1117/12.2546004","mag":"3012399666","pmid":"https://pubmed.ncbi.nlm.nih.gov/34267414"},"language":"en","primary_location":{"id":"doi:10.1117/12.2546004","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2546004","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8279009","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066038745","display_name":"Syed Ahmed Nadeem","orcid":"https://orcid.org/0000-0002-5933-3825"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Syed Ahmed Nadeem","raw_affiliation_strings":["Department of Electrical and Computer Engineering, College of Engineering, University of Iowa, Iowa City, Iowa, USA 52242","Univ. of Iowa (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, College of Engineering, University of Iowa, Iowa City, Iowa, USA 52242","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Univ. of Iowa (United States)","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011527598","display_name":"Eric A. Hoffman","orcid":"https://orcid.org/0000-0001-8456-9437"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric A. Hoffman","raw_affiliation_strings":["Department of Radiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA 52242","Carver College of Medicine, Univ. of Iowa (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA 52242","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Carver College of Medicine, Univ. of Iowa (United States)","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077939584","display_name":"Alejandro P. Comellas","orcid":"https://orcid.org/0000-0003-1521-7520"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alejandro P. Comellas","raw_affiliation_strings":["Department of Internal Medicine, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA 52242","Carver College of Medicine, Univ. of Iowa (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA 52242","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Carver College of Medicine, Univ. of Iowa (United States)","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033203259","display_name":"Punam K. Saha","orcid":"https://orcid.org/0000-0003-1576-118X"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Punam K. Saha","raw_affiliation_strings":["Department of Electrical and Computer Engineering, College of Engineering, University of Iowa, Iowa City, Iowa, USA 52242","Department of Radiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA 52242","Carver College of Medicine, Univ. of Iowa (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, College of Engineering, University of Iowa, Iowa City, Iowa, USA 52242","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Radiology, Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA 52242","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Carver College of Medicine, Univ. of Iowa (United States)","institution_ids":["https://openalex.org/I126307644"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I126307644"],"apc_list":null,"apc_paid":null,"fwci":0.2496,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.58879424,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"11313","issue":null,"first_page":"37","last_page":"37"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10143","display_name":"Chronic Obstructive Pulmonary Disease (COPD) Research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10143","display_name":"Chronic Obstructive Pulmonary Disease (COPD) Research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10234","display_name":"Obstructive Sleep Apnea Research","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/airway","display_name":"Airway","score":0.6880114674568176},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6428923606872559},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5352827310562134},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.534238338470459},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5083772540092468},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4905168414115906},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3907296359539032},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3691951632499695},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3685160279273987},{"id":"https://openalex.org/keywords/surgery","display_name":"Surgery","score":0.10840892791748047}],"concepts":[{"id":"https://openalex.org/C105922876","wikidata":"https://www.wikidata.org/wiki/Q1423981","display_name":"Airway","level":2,"score":0.6880114674568176},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6428923606872559},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5352827310562134},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.534238338470459},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5083772540092468},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4905168414115906},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3907296359539032},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3691951632499695},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3685160279273987},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.10840892791748047},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2546004","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2546004","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2020: Image Processing","raw_type":"proceedings-article"},{"id":"pmid:34267414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34267414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8279009","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8279009","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8279009","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8279009","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5}],"awards":[{"id":"https://openalex.org/G1472646405","display_name":null,"funder_award_id":"R01 HL142042","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G2644038179","display_name":null,"funder_award_id":"U01 HL089897","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3955570234","display_name":null,"funder_award_id":"S10 OD026960","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6163026705","display_name":null,"funder_award_id":"R01 HL112986","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W196669307","https://openalex.org/W1787274178","https://openalex.org/W1933728871","https://openalex.org/W2002361709","https://openalex.org/W2031674734","https://openalex.org/W2071649014","https://openalex.org/W2082907106","https://openalex.org/W2084476072","https://openalex.org/W2119347922","https://openalex.org/W2120397327","https://openalex.org/W2127890285","https://openalex.org/W2139131213","https://openalex.org/W2143944689","https://openalex.org/W2761463731","https://openalex.org/W2797313070"],"related_works":["https://openalex.org/W3193043704","https://openalex.org/W4386259002","https://openalex.org/W1546989560","https://openalex.org/W3171520305","https://openalex.org/W3135126032","https://openalex.org/W1924178503","https://openalex.org/W4308716060","https://openalex.org/W4280648719","https://openalex.org/W4386937079","https://openalex.org/W4394984040"],"abstract_inverted_index":{"Chronic":[0],"obstructive":[1],"pulmonary":[2],"disease":[3,9],"(COPD)":[4],"is":[5,98,143],"a":[6,50,201],"common":[7],"inflammatory":[8],"associated":[10,79],"with":[11,80],"restricted":[12],"lung":[13,146,168],"airflow.":[14],"Quantitative":[15],"computed":[16],"tomography":[17],"(CT)-based":[18],"bronchial":[19],"measures":[20],"are":[21,78],"popularly":[22],"used":[23,195,208],"in":[24,70,136,227],"COPD-related":[25],"studies,":[26],"which":[27],"require":[28],"both":[29],"airway":[30,46,61,68,137],"segmentation":[31],"and":[32,55,84,101,114,164,198,200,211,225,237,242],"anatomical":[33,42,75,126,150],"branch":[34],"labeling.":[35],"This":[36],"paper":[37],"presents":[38],"an":[39,243,258],"algorithm":[40],"for":[41,86,134,145,152,196,209],"labeling":[43,59,76,218],"of":[44,60,67,149,180,204,220,246,260],"human":[45],"tree":[47],"branches":[48,62,127],"using":[49,166],"novel":[51],"two-step":[52],"machine":[53,120,157],"learning":[54,121,158],"hierarchical":[56,104],"features.":[57],"Anatomical":[58],"allows":[63],"standardized":[64],"spatial":[65],"referencing":[66],"phenotypes":[69],"large":[71],"population-based":[72],"studies.":[73],"State-of-the-art":[74],"methods":[77],"mandatory":[81],"manual":[82],"reviewing":[83],"correction":[85],"mislabeled":[87],"branches-a":[88],"time-consuming":[89],"process":[90],"susceptible":[91],"to":[92],"inter-observer":[93],"variability.":[94],"The":[95,140,156,214],"new":[96,215],"method":[97,216,255],"fully":[99],"automated,":[100],"it":[102,123],"uses":[103],"branch-level":[105],"features":[106],"from":[107,128,176],"the":[108,118,177,181,228,254],"current":[109],"as":[110,112],"well":[111],"ancestral":[113],"descendant":[115],"branches.":[116,155],"During":[117],"first":[119],"step,":[122],"differentiates":[124],"candidate":[125,154],"insignificant":[129],"topological":[130],"branches,":[131,253],"often,":[132],"responsible":[133],"variations":[135],"branching":[138],"patterns.":[139],"second":[141],"step":[142],"designed":[144],"lobe-based":[147],"classification":[148],"labels":[151],"valid":[153],"classifiers":[159],"has":[160,256],"been":[161],"designed,":[162],"trained,":[163],"validated":[165],"total":[167],"capacity":[169],"(TLC)":[170],"CT":[171,192],"scans":[172,193,206],"(n":[173],"=":[174],"350)":[175],"Iowa":[178],"cohort":[179],"nationwide":[182],"COPDGene":[183],"study":[184],"during":[185],"their":[186],"baseline":[187],"visits.":[188],"One":[189],"hundred":[190],"TLC":[191],"were":[194,207],"training":[197],"validation,":[199],"different":[202],"set":[203],"250":[205],"testing":[210],"evaluative":[212],"experiments.":[213],"achieved":[217,257],"accuracies":[219],"98.4,":[221],"97.2,":[222],"92.3,":[223],"93.4,":[224],"94.1%":[226],"right":[229,231,233],"upper,":[230,236],"middle,":[232],"lower,":[234],"left":[235,238],"lower":[239],"lobe,":[240],"respectively,":[241],"overall":[244],"accuracy":[245,259],"95.9%.":[247],"For":[248],"five":[249],"clinically":[250],"significant":[251],"segmental":[252],"95.2%.":[261]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
