{"id":"https://openalex.org/W2922518371","doi":"https://doi.org/10.1117/12.2514000","title":"Cascaded convolutional neural networks for spine chordoma tumor segmentation from MRI","display_name":"Cascaded convolutional neural networks for spine chordoma tumor segmentation from MRI","publication_year":2019,"publication_date":"2019-03-15","ids":{"openalex":"https://openalex.org/W2922518371","doi":"https://doi.org/10.1117/12.2514000","mag":"2922518371"},"language":"en","primary_location":{"id":"doi:10.1117/12.2514000","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2514000","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109599518","display_name":"Syed M. S. Reza","orcid":null},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Syed M. S. Reza","raw_affiliation_strings":["Henry M. Jackson Foundation (United States)"],"affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation (United States)","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1280259254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012909412","display_name":"Snehashis Roy","orcid":"https://orcid.org/0000-0002-7997-3993"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Snehashis Roy","raw_affiliation_strings":["Henry M. Jackson Foundation (United States)"],"affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation (United States)","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1280259254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061314376","display_name":"Deric M. Park","orcid":"https://orcid.org/0000-0002-8683-7340"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deric M. Park","raw_affiliation_strings":["The Univ. of Chicago (United States)"],"affiliations":[{"raw_affiliation_string":"The Univ. of Chicago (United States)","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005891853","display_name":"Dzung L. Pham","orcid":"https://orcid.org/0000-0003-0053-2034"},"institutions":[{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]},{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dzung L. Pham","raw_affiliation_strings":["Henry M. Jackson Foundation (United States)"],"affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation (United States)","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1280259254"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026908064","display_name":"John A. Butman","orcid":"https://orcid.org/0000-0002-1547-9195"},"institutions":[{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]},{"id":"https://openalex.org/I1280259254","display_name":"Henry M. Jackson Foundation","ror":"https://ror.org/04q9tew83","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1280259254"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John A. Butman","raw_affiliation_strings":["Henry M. Jackson Foundation (United States)","National Institute of Health (United States)"],"affiliations":[{"raw_affiliation_string":"Henry M. Jackson Foundation (United States)","institution_ids":["https://openalex.org/I4210100506","https://openalex.org/I1280259254"]},{"raw_affiliation_string":"National Institute of Health (United States)","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5109599518"],"corresponding_institution_ids":["https://openalex.org/I1280259254","https://openalex.org/I4210100506"],"apc_list":null,"apc_paid":null,"fwci":0.5482,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.67010437,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"75","last_page":"75"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10975","display_name":"Bone Tumor Diagnosis and Treatments","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10975","display_name":"Bone Tumor Diagnosis and Treatments","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7457616329193115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6732961535453796},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6519099473953247},{"id":"https://openalex.org/keywords/chordoma","display_name":"Chordoma","score":0.63410884141922},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5859553813934326},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.5317256450653076},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.5002498626708984},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.49110960960388184},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.45390334725379944},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4324362277984619},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.4205556809902191},{"id":"https://openalex.org/keywords/skull","display_name":"Skull","score":0.41952720284461975},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.24959760904312134},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.15342551469802856},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.08104506134986877}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7457616329193115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6732961535453796},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6519099473953247},{"id":"https://openalex.org/C2781190729","wikidata":"https://www.wikidata.org/wiki/Q1076389","display_name":"Chordoma","level":2,"score":0.63410884141922},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5859553813934326},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.5317256450653076},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.5002498626708984},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.49110960960388184},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.45390334725379944},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4324362277984619},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.4205556809902191},{"id":"https://openalex.org/C2779300802","wikidata":"https://www.wikidata.org/wiki/Q13147","display_name":"Skull","level":2,"score":0.41952720284461975},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.24959760904312134},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.15342551469802856},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.08104506134986877},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2514000","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2514000","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1641498739","https://openalex.org/W1973942156","https://openalex.org/W1982132176","https://openalex.org/W2008056655","https://openalex.org/W2038533573","https://openalex.org/W2048515486","https://openalex.org/W2117340355","https://openalex.org/W2129259959","https://openalex.org/W2135011268","https://openalex.org/W2136145485","https://openalex.org/W2163108348","https://openalex.org/W2484736472","https://openalex.org/W2575552683","https://openalex.org/W2589409328","https://openalex.org/W2911964244","https://openalex.org/W2919115771","https://openalex.org/W6674914833","https://openalex.org/W6763280513"],"related_works":["https://openalex.org/W2590191193","https://openalex.org/W2503017288","https://openalex.org/W3196588246","https://openalex.org/W2416915018","https://openalex.org/W2406676890","https://openalex.org/W2110510550","https://openalex.org/W4225775489","https://openalex.org/W4327931655","https://openalex.org/W2605860178","https://openalex.org/W2359085193"],"abstract_inverted_index":{"Chordoma":[0],"is":[1,45,142,194],"a":[2,46,158,175],"rare":[3],"type":[4],"of":[5,37,55,72,148,161,184,208],"tumor":[6,117,128,169,185],"that":[7],"usually":[8],"appears":[9],"in":[10,24,31,202],"the":[11,14,25,62,73,84,109,119,123,131,136,164,182,198,216],"bone":[12],"near":[13],"spinal":[15],"cord":[16],"and":[17,28,33,166],"skull":[18,26],"base.":[19],"Due":[20],"to":[21,80,113,125,172,197,213],"their":[22],"location":[23],"base":[27],"diverse":[29],"appearance":[30],"size":[32],"shape,":[34],"automatic":[35,92],"segmentation":[36,63,76,94],"chordoma":[38,93],"tumors":[39,204],"from":[40,65,130,152],"magnetic":[41],"resonance":[42],"images":[43,147],"(MRI)":[44],"challenging":[47],"task.":[48],"In":[49,69,86],"addition,":[50],"similar":[51],"MR":[52,146],"intensity":[53],"distributions":[54],"different":[56],"anatomical":[57],"regions,":[58],"specifically":[59],"sinuses,":[60],"make":[61],"task":[64],"MRI":[66],"more":[67],"challenging.":[68],"comparison,":[70],"most":[71],"state-of-the-art":[74],"lesion":[75],"methods":[77],"are":[78],"designed":[79],"segment":[81],"pathologies":[82],"inside":[83],"brain.":[85],"this":[87],"work,":[88],"we":[89],"propose":[90],"an":[91,105,206],"framework":[95],"using":[96,144],"two":[97],"cascaded":[98],"3D":[99],"convolutional":[100],"neural":[101],"networks":[102],"(CNN)":[103],"via":[104],"auto-context":[106],"model.":[107],"While":[108],"first":[110,137],"network":[111,121],"learns":[112],"detect":[114],"all":[115],"potential":[116],"voxels,":[118],"second":[120],"fine-tunes":[122],"classifier":[124],"distinguish":[126],"true":[127],"voxels":[129],"false":[132],"positives":[133],"detected":[134,165],"by":[135],"network.":[138],"The":[139],"proposed":[140],"method":[141],"evaluated":[143,195],"multi-contrast":[145],"22":[149],"longitudinal":[150],"scans":[151],"8":[153],"patients.":[154],"Preliminary":[155],"results":[156],"showed":[157],"linear":[159],"correlation":[160],"0.71":[162],"between":[163],"manually":[167],"outlined":[168],"volumes,":[170],"compared":[171,212],"0.40":[173],"for":[174,215],"random":[176],"forest":[177],"(RF)":[178],"based":[179,218],"method.":[180,219],"Furthermore,":[181],"response":[183,199],"growth":[186],"over":[187],"time,":[188],"i.e.":[189],"increasing,":[190],"decreasing,":[191],"or":[192],"stable,":[193],"according":[196],"evaluation":[200],"criteria":[201],"solid":[203],"with":[205],"outcome":[207],"0.26":[209],"kappa":[210],"coefficient,":[211],"0.13":[214],"RF":[217]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
