{"id":"https://openalex.org/W2905398916","doi":"https://doi.org/10.1117/12.2512559","title":"Montage based 3D medical image retrieval from traumatic brain injury cohort using deep convolutional neural network","display_name":"Montage based 3D medical image retrieval from traumatic brain injury cohort using deep convolutional neural network","publication_year":2019,"publication_date":"2019-03-15","ids":{"openalex":"https://openalex.org/W2905398916","doi":"https://doi.org/10.1117/12.2512559","mag":"2905398916","pmid":"https://pubmed.ncbi.nlm.nih.gov/31762533"},"language":"en","primary_location":{"id":"doi:10.1117/12.2512559","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2512559","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2019: Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6874227","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025305700","display_name":"Cailey I. Kerley","orcid":"https://orcid.org/0000-0002-0866-8617"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cailey I. Kerley","raw_affiliation_strings":["Department of Electrical Engineering, Vanderbilt University, Nashville, TN, USA","Vanderbilt Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067191302","display_name":"Yuankai Huo","orcid":"https://orcid.org/0000-0002-2096-8065"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuankai Huo","raw_affiliation_strings":["Department of Electrical Engineering, Vanderbilt University, Nashville, TN, USA","Vanderbilt Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078301136","display_name":"Shikha Chaganti","orcid":"https://orcid.org/0000-0002-7029-2665"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shikha Chaganti","raw_affiliation_strings":["Department of Computer Science, Vanderbilt University, Nashville, TN, USA","Vanderbilt Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048972725","display_name":"Shunxing Bao","orcid":"https://orcid.org/0000-0001-6376-4292"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shunxing Bao","raw_affiliation_strings":["Department of Computer Science, Vanderbilt University, Nashville, TN, USA","Dept. of Comput. Sci., Vanderbilt Univ., Nashville, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Vanderbilt Univ., Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018571955","display_name":"Mayur B. Patel","orcid":"https://orcid.org/0000-0001-5230-0871"},"institutions":[{"id":"https://openalex.org/I4210101790","display_name":"VA Tennessee Valley Healthcare System","ror":"https://ror.org/01c9rqr26","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210101790","https://openalex.org/I4210112672"]},{"id":"https://openalex.org/I2799886695","display_name":"Veterans Health Administration","ror":"https://ror.org/05eq41471","country_code":"US","type":"government","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695"]},{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mayur B. Patel","raw_affiliation_strings":["Departments of Surgery, Neurosurgery, Hearing & Speech Sciences; Center for Health Services Research, Vanderbilt Brain Institute; Critical Illness, Brain Dysfunction, and Survivorship Center, Vanderbilt University Medical Center; VA Tennessee Valley Healthcare System, Department of Veterans Affairs Medical Center, Nashville, TN, USA","Tennessee Valley Healthcare System (United States)","Vanderbilt Univ. (United States)","Veterans Affairs Medical Ctr. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Surgery, Neurosurgery, Hearing & Speech Sciences; Center for Health Services Research, Vanderbilt Brain Institute; Critical Illness, Brain Dysfunction, and Survivorship Center, Vanderbilt University Medical Center; VA Tennessee Valley Healthcare System, Department of Veterans Affairs Medical Center, Nashville, TN, USA","institution_ids":[]},{"raw_affiliation_string":"Tennessee Valley Healthcare System (United States)","institution_ids":["https://openalex.org/I4210101790"]},{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Veterans Affairs Medical Ctr. (United States)","institution_ids":["https://openalex.org/I2799886695"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075735203","display_name":"Bennett A. Landman","orcid":"https://orcid.org/0000-0001-5733-2127"},"institutions":[{"id":"https://openalex.org/I901861585","display_name":"Vanderbilt University Medical Center","ror":"https://ror.org/05dq2gs74","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210162197","https://openalex.org/I901861585"]},{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bennett A. Landman","raw_affiliation_strings":["Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA","Department of Computer Science, Vanderbilt University, Nashville, TN, USA","Department of Electrical Engineering, Vanderbilt University, Nashville, TN, USA","Departments of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA","Institute of Imaging Science, Vanderbilt University, Nashville, TN, USA","Vanderbilt Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Computer Science, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Department of Electrical Engineering, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Departments of Radiology and Radiological Sciences, Vanderbilt University Medical Center, Nashville, TN, USA","institution_ids":["https://openalex.org/I901861585"]},{"raw_affiliation_string":"Institute of Imaging Science, Vanderbilt University, Nashville, TN, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5025305700"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":null,"apc_paid":null,"fwci":0.5285,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.67345569,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"10949","issue":null,"first_page":"101","last_page":"101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.690271258354187},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6096946001052856},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5464901924133301},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.5310400128364563},{"id":"https://openalex.org/keywords/medical-imaging","display_name":"Medical imaging","score":0.5047446489334106},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4735744893550873},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.36353081464767456},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.3440735936164856},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32818472385406494}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.690271258354187},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6096946001052856},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5464901924133301},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.5310400128364563},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.5047446489334106},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4735744893550873},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.36353081464767456},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.3440735936164856},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32818472385406494},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2512559","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2512559","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2019: Image Processing","raw_type":"proceedings-article"},{"id":"pmid:31762533","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31762533","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6874227","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6874227","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:6874227","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6874227","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W413967189","https://openalex.org/W1522301498","https://openalex.org/W1965940698","https://openalex.org/W2194775991","https://openalex.org/W2303586283","https://openalex.org/W2345526333","https://openalex.org/W2601707599","https://openalex.org/W2768570904","https://openalex.org/W2777766203","https://openalex.org/W2802349450","https://openalex.org/W2899771611","https://openalex.org/W2964189960","https://openalex.org/W6631190155","https://openalex.org/W6687483927","https://openalex.org/W6746452023","https://openalex.org/W6756040250"],"related_works":["https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3103566983","https://openalex.org/W3029198973","https://openalex.org/W3024479225","https://openalex.org/W4323287533","https://openalex.org/W3171371563","https://openalex.org/W2995680918"],"abstract_inverted_index":{"Brain":[0],"imaging":[1,33,62],"analysis":[2],"on":[3,152,180],"clinically":[4,189],"acquired":[5,190],"computed":[6],"tomography":[7],"(CT)":[8],"is":[9,94,113,171,240],"essential":[10],"for":[11,76,122,168,224,233],"the":[12,21,80,99,105,109,123,128,165,174,181,208,237],"diagnosis,":[13],"risk":[14],"prediction":[15],"of":[16,20,24,59,66,164,187],"progression,":[17],"and":[18,115,118,207],"treatment":[19],"structural":[22],"phenotypes":[23],"traumatic":[25],"brain":[26,50,72,78,84,101,247],"injury":[27],"(TBI).":[28],"However,":[29,108],"in":[30,55,131],"real":[31],"clinical":[32,60,252],"scenarios,":[34],"entire":[35,106],"body":[36],"CT":[37,51,67,73,102,245],"images":[38,74,155],"(e.g.,":[39],"neck,":[40],"abdomen,":[41],"chest,":[42],"pelvis)":[43],"are":[44,82],"typically":[45,95],"captured":[46],"along":[47],"with":[48],"whole":[49,71,100,246],"scans.":[52],"For":[53],"instance,":[54],"a":[56,89,157,185],"typical":[57],"sample":[58],"TBI":[61,191],"cohort,":[63],"only":[64],"~15%":[65],"scans":[68,103,194,201,211],"actually":[69],"contain":[70],"suitable":[75],"volumetric":[77],"analyses;":[79],"remaining":[81,209],"partial":[83],"or":[85],"non-brain":[86],"images.":[87,183],"Therefore,":[88],"manual":[90,110,129],"image":[91,111,140,146,169,176,248],"retrieval":[92,112,141,147,177,249],"process":[93],"required":[96],"to":[97,172,242],"isolate":[98],"from":[104,250],"cohort.":[107],"time":[114],"resource":[116],"consuming":[117],"even":[119],"more":[120],"difficult":[121],"larger":[124],"cohorts.":[125,253],"To":[126],"alleviate":[127],"efforts,":[130],"this":[132],"paper":[133],"we":[134],"propose":[135],"an":[136],"automated":[137],"3D":[138],"medical":[139,175],"pipeline,":[142],"called":[143],"deep":[144,158],"montage-based":[145],"(dMIR),":[148],"which":[149],"performs":[150],"classification":[151],"2D":[153],"montage":[154,182],"via":[156],"convolutional":[159],"neural":[160],"network.":[161],"The":[162,217],"novelty":[163],"proposed":[166,218,238],"method":[167],"processing":[170],"characterize":[173],"task":[178],"based":[179],"In":[184],"cohort":[186],"2000":[188],"scans,":[192],"794":[193],"were":[195,202,212],"used":[196,203,213],"as":[197,204,214],"training":[198],"data,":[199,206,226],"206":[200],"validation":[205,225],"1000":[210],"testing":[215,234],"data.":[216,235],"achieved":[219,228],"accuracy=1.0,":[220],"recall=1.0,":[221],"precision=1.0,":[222],"f1=1.0":[223],"while":[227],"accuracy=0.988,":[229],"recall=0.962,":[230],"precision=0.962,":[231],"f1=0.962":[232],"Thus,":[236],"dMIR":[239],"able":[241],"perform":[243],"accurate":[244],"large-scale":[251]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}