{"id":"https://openalex.org/W2794317529","doi":"https://doi.org/10.1117/12.2293116","title":"A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images","display_name":"A novel framework for the local extraction of extra-axial cerebrospinal fluid from MR brain images","publication_year":2018,"publication_date":"2018-03-02","ids":{"openalex":"https://openalex.org/W2794317529","doi":"https://doi.org/10.1117/12.2293116","mag":"2794317529","pmid":"https://pubmed.ncbi.nlm.nih.gov/30364673"},"language":"en","primary_location":{"id":"doi:10.1117/12.2293116","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2293116","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2018: Image Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6197819","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041849919","display_name":"Mark D. Shen","orcid":"https://orcid.org/0000-0002-1190-7981"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mark D. Shen","raw_affiliation_strings":["Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","Department of Psychiatry, University of North Carolina at Chapel Hill, USA","The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Psychiatry, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060063272","display_name":"SunHyung Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"SunHyung Kim","raw_affiliation_strings":["Department of Psychiatry, University of North Carolina at Chapel Hill, USA","The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Psychiatry, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048454883","display_name":"Meghan R. Swanson","orcid":"https://orcid.org/0000-0001-8474-3458"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meghan Swanson","raw_affiliation_strings":["Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","Department of Psychiatry, University of North Carolina at Chapel Hill, USA","The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Psychiatry, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061155266","display_name":"D. Louis Collins","orcid":"https://orcid.org/0000-0002-8432-7021"},"institutions":[{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Louis Collins","raw_affiliation_strings":["Montreal Neurological Institute (Canada)"],"affiliations":[{"raw_affiliation_string":"Montreal Neurological Institute (Canada)","institution_ids":["https://openalex.org/I1292859797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014525522","display_name":"Vladimir Fonov","orcid":"https://orcid.org/0000-0003-3402-7749"},"institutions":[{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vladimir Fonov","raw_affiliation_strings":["McConnell Brain Imaging Center, Montreal Neurological Institute, Canada","Montreal Neurological Institute (Canada)"],"affiliations":[{"raw_affiliation_string":"McConnell Brain Imaging Center, Montreal Neurological Institute, Canada","institution_ids":["https://openalex.org/I1292859797"]},{"raw_affiliation_string":"Montreal Neurological Institute (Canada)","institution_ids":["https://openalex.org/I1292859797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010769610","display_name":"Guido Gerig","orcid":"https://orcid.org/0000-0002-9547-6233"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Guido Gerig","raw_affiliation_strings":["Department of Computer Science and Engineering, New York University, USA","New York Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, New York University, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"New York Univ. (United States)","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052438867","display_name":"Joseph Piven","orcid":"https://orcid.org/0000-0003-0255-9003"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Piven","raw_affiliation_strings":["Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","Department of Psychiatry, University of North Carolina at Chapel Hill, USA","The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Psychiatry, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065838160","display_name":"Martin Styner","orcid":"https://orcid.org/0000-0002-8747-5118"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin A. Styner","raw_affiliation_strings":["Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","Department of Computer Science, University of North Carolina at Chapel Hill, USA","Department of Psychiatry, University of North Carolina at Chapel Hill, USA","The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"Carolina Institute for Developmental Disabilities, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Computer Science, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"Department of Psychiatry, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079299310","display_name":"Mahmoud Mostapha","orcid":"https://orcid.org/0000-0001-6019-1492"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mahmoud Mostapha","raw_affiliation_strings":["Department of Computer Science, University of North Carolina at Chapel Hill, USA","The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of North Carolina at Chapel Hill, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5041849919"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":null,"apc_paid":null,"fwci":0.7287,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.76292276,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"9784","issue":null,"first_page":"30","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11406","display_name":"Cerebrospinal fluid and hydrocephalus","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cerebrospinal-fluid","display_name":"Cerebrospinal fluid","score":0.6710898876190186},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6380615234375},{"id":"https://openalex.org/keywords/subarachnoid-space","display_name":"Subarachnoid space","score":0.6144233345985413},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.5420530438423157},{"id":"https://openalex.org/keywords/streamlines-streaklines-and-pathlines","display_name":"Streamlines, streaklines, and pathlines","score":0.5170717835426331},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37249988317489624},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37070518732070923},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.30490708351135254},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24157169461250305},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1465855836868286},{"id":"https://openalex.org/keywords/mechanics","display_name":"Mechanics","score":0.12251675128936768}],"concepts":[{"id":"https://openalex.org/C2779651940","wikidata":"https://www.wikidata.org/wiki/Q54196","display_name":"Cerebrospinal fluid","level":2,"score":0.6710898876190186},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6380615234375},{"id":"https://openalex.org/C2780813603","wikidata":"https://www.wikidata.org/wiki/Q268930","display_name":"Subarachnoid space","level":3,"score":0.6144233345985413},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.5420530438423157},{"id":"https://openalex.org/C60439489","wikidata":"https://www.wikidata.org/wiki/Q634407","display_name":"Streamlines, streaklines, and pathlines","level":2,"score":0.5170717835426331},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37249988317489624},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37070518732070923},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.30490708351135254},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24157169461250305},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1465855836868286},{"id":"https://openalex.org/C57879066","wikidata":"https://www.wikidata.org/wiki/Q41217","display_name":"Mechanics","level":1,"score":0.12251675128936768}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1117/12.2293116","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2293116","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2018: Image Processing","raw_type":"proceedings-article"},{"id":"pmid:30364673","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30364673","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:europepmc.org:5142467","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6197819","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6197819","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6197819","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:6197819","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6197819","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1969576961","https://openalex.org/W2009761203","https://openalex.org/W2116471897","https://openalex.org/W2131339155","https://openalex.org/W2158649156","https://openalex.org/W2175004183","https://openalex.org/W2302992018","https://openalex.org/W2346463831","https://openalex.org/W2594744452","https://openalex.org/W6697955701","https://openalex.org/W6734378208"],"related_works":["https://openalex.org/W2415383105","https://openalex.org/W2023244054","https://openalex.org/W2764334540","https://openalex.org/W4293097560","https://openalex.org/W1543460188","https://openalex.org/W2045401688","https://openalex.org/W1972670736","https://openalex.org/W2470064111","https://openalex.org/W4214811308","https://openalex.org/W2119374556"],"abstract_inverted_index":{"The":[0,166,185],"quantification":[1],"of":[2,42,84],"cerebrospinal":[3],"fluid":[4,24],"(CSF)":[5],"in":[6,17,32,38,60,181,204],"the":[7,30,33,39,78,112,125,129,149,152,159,163,176,189],"human":[8],"brain":[9,20,93,179],"has":[10],"shown":[11],"to":[12,55,147,174],"play":[13],"an":[14],"important":[15],"role":[16],"early":[18,40,177],"postnatal":[19,178],"developmental.":[21],"Extr":[22],"a-axial":[23],"(EA-CSF),":[25],"which":[26],"is":[27,36,52,64,155],"characterized":[28],"by":[29,116,157],"CSF":[31,131,160],"subarachnoid":[34],"space,":[35],"promising":[37],"detection":[41],"children":[43],"at":[44],"risk":[45],"for":[46,66,77],"neurodevelopmental":[47],"disorders.":[48],"Currently,":[49],"though,":[50],"there":[51],"no":[53],"tool":[54,171],"extract":[56],"local":[57,104,153,168],"EA-CSF":[58,105,154,169,192],"measurements":[59],"a":[61,74,118],"way":[62],"that":[63,188,200],"suitable":[65],"localized":[67,191],"analysis.":[68],"In":[69,86],"this":[70],"paper,":[71],"we":[72,90,110],"propose":[73],"novel":[75],"framework":[76],"localized,":[79],"cortical":[80,96,126],"surface":[81,97,127],"based":[82,103],"analysis":[83],"EA-CSF.":[85],"our":[87],"proposed":[88,167,190],"processing,":[89],"combine":[91],"probabilistic":[92],"tissue":[94],"segmentation,":[95],"reconstruction":[98],"as":[99,101],"well":[100],"streamline":[102,108],"quantification.":[106],"For":[107],"computation,":[109],"employ":[111],"vector":[113],"field":[114],"generated":[115,164],"solving":[117],"Laplacian":[119],"partial":[120],"differential":[121],"equation":[122],"(PDE)":[123],"between":[124],"and":[128],"outer":[130],"hull.":[132],"To":[133],"achieve":[134],"sub-voxel":[135],"accuracy":[136],"while":[137],"minimizing":[138],"numerical":[139],"errors,":[140],"fourth-order":[141],"Runge-Kutta":[142],"(RK4)":[143],"integration":[144],"was":[145,172],"used":[146,173],"generate":[148],"streamlines.":[150,165],"Finally,":[151],"computed":[156],"integrating":[158],"probability":[161],"along":[162],"extraction":[170,193],"study":[175],"development":[180],"typically":[182],"developing":[183],"infants.":[184],"results":[186],"show":[187],"pipeline":[194],"can":[195],"produce":[196],"statistically":[197],"significant":[198],"regions":[199],"are":[201],"not":[202],"observed":[203],"previous":[205],"global":[206],"approach.":[207]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2018-03-29T00:00:00"}
