{"id":"https://openalex.org/W2769697726","doi":"https://doi.org/10.1117/12.2285916","title":"Semantic knowledge for histopathological image analysis: from ontologies to processing portals and deep learning","display_name":"Semantic knowledge for histopathological image analysis: from ontologies to processing portals and deep learning","publication_year":2017,"publication_date":"2017-11-17","ids":{"openalex":"https://openalex.org/W2769697726","doi":"https://doi.org/10.1117/12.2285916","mag":"2769697726"},"language":"en","primary_location":{"id":"doi:10.1117/12.2285916","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2285916","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th International Conference on Medical Information Processing and Analysis","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066171121","display_name":"Daniel Racoceanu","orcid":"https://orcid.org/0000-0002-9416-1803"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I65285256","display_name":"Pontifical Catholic University of Peru","ror":"https://ror.org/00013q465","country_code":"PE","type":"education","lineage":["https://openalex.org/I65285256"]}],"countries":["FR","PE"],"is_corresponding":true,"raw_author_name":"Daniel Racoceanu","raw_affiliation_strings":["Pontifical Catholic Univ. of Peru (Peru)","Sorbonne Univ., UPMC Univ. Paris 6, CNRS, INSERM (France)"],"affiliations":[{"raw_affiliation_string":"Pontifical Catholic Univ. of Peru (Peru)","institution_ids":["https://openalex.org/I65285256"]},{"raw_affiliation_string":"Sorbonne Univ., UPMC Univ. Paris 6, CNRS, INSERM (France)","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014400532","display_name":"Yannick Kergosien","orcid":"https://orcid.org/0000-0002-9343-0266"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210142324","display_name":"CY Cergy Paris Universit\u00e9","ror":"https://ror.org/043htjv09","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210142324"]},{"id":"https://openalex.org/I4389425324","display_name":"Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances en e-Sant\u00e9","ror":"https://ror.org/01jr1v359","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210091279","https://openalex.org/I4389425324"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yannick L. Kergosien","raw_affiliation_strings":["Sorbonne Univ., UPMC Univ. Paris 6, INSERM, Univ. Partis 13, LIMICS (France)","Univ. de Cergy-Pontoise (France)"],"affiliations":[{"raw_affiliation_string":"Sorbonne Univ., UPMC Univ. Paris 6, INSERM, Univ. Partis 13, LIMICS (France)","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4389425324"]},{"raw_affiliation_string":"Univ. de Cergy-Pontoise (France)","institution_ids":["https://openalex.org/I4210142324"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066171121"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I65285256"],"apc_list":null,"apc_paid":null,"fwci":0.319,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.59049551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"33","last_page":"33"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8016024827957153},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.6402804851531982},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5984474420547485},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.45605939626693726},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4461562931537628},{"id":"https://openalex.org/keywords/social-semantic-web","display_name":"Social Semantic Web","score":0.43157482147216797},{"id":"https://openalex.org/keywords/traceability","display_name":"Traceability","score":0.42472001910209656},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.41263625025749207},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40247929096221924},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.14528226852416992}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8016024827957153},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.6402804851531982},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5984474420547485},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45605939626693726},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4461562931537628},{"id":"https://openalex.org/C534406577","wikidata":"https://www.wikidata.org/wiki/Q7550843","display_name":"Social Semantic Web","level":3,"score":0.43157482147216797},{"id":"https://openalex.org/C153876917","wikidata":"https://www.wikidata.org/wiki/Q899704","display_name":"Traceability","level":2,"score":0.42472001910209656},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.41263625025749207},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40247929096221924},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.14528226852416992},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2285916","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2285916","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"13th International Conference on Medical Information Processing and Analysis","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2416704114","https://openalex.org/W2349698472","https://openalex.org/W1975429881","https://openalex.org/W2366430559","https://openalex.org/W2025728896","https://openalex.org/W2013055153","https://openalex.org/W1985801232","https://openalex.org/W1585941060","https://openalex.org/W2174306336","https://openalex.org/W2355823470"],"abstract_inverted_index":{"This":[0,132,377],"article":[1],"presents":[2],"our":[3],"vision":[4],"about":[5],"the":[6,18,33,38,47,60,97,100,104,107,112,141,152,158,178,191,195,198,235,246,265,281,323,343,372,399,420,427],"next":[7,142],"generation":[8,143],"of":[9,17,49,114,144,201,237,254,264,283,322,345,374,429],"challenges":[10,64,357],"in":[11,22,59,73,103,111,122,177,242,355,371,424,441],"computational/digital":[12],"pathology.":[13],"The":[14],"key":[15],"role":[16],"domain":[19],"ontology,":[20],"developed":[21],"a":[23,134,166,202,292,298,303,317],"sustainable":[24,203],"manner":[25],"(i.e.":[26,65],"using":[27,329],"reference":[28],"checklists":[29],"and":[30,43,86,90,130,155,169,248,302,341,386,419],"protocols,":[31],"as":[32,335,337,359],"living":[34,108],"semantic":[35,230],"repositories),":[36],"opens":[37],"way":[39,137],"to":[40,55,71,118,124,138,140,147,151,157,175,190,239,277,286,306,381,388,408,443],"effective/sustainable":[41],"traceability":[42,387],"relevance":[44],"feedback":[45,168],"concerning":[46],"use":[48],"existing":[50],"machine":[51,185,287],"learning":[52,186,401,411],"algorithms,":[53,412],"proven":[54],"be":[56,119,172,240,278,353],"very":[57,120,135],"performant":[58],"latest":[61],"digital":[62],"pathology":[63,116,439],"convolutional":[66],"neural":[67],"networks).":[68],"Being":[69],"able":[70,146],"work":[72],"an":[74,126,161,383,393,432],"accessible":[75,249],"web-service":[76],"environment,":[77],"with":[78,216,392],"strictly":[79],"controlled":[80],"issues":[81],"regarding":[82],"intellectual":[83],"property":[84],"(image":[85],"data":[87],"processing/analysis":[88],"algorithms)":[89],"medical":[91],"data/image":[92],"confidentiality":[93],"is":[94,379],"essential":[95],"for":[96,226,280,363],"future.":[98],"Among":[99],"web-services":[101],"involved":[102],"proposed":[105],"approach,":[106],"yellow":[109],"pages":[110],"area":[113],"computational":[115],"seems":[117],"important":[121],"order":[123],"reach":[125],"operational":[127],"awareness,":[128],"validation,":[129],"feasibility.":[131],"represents":[133],"promising":[136,395,421],"go":[139],"tools,":[145],"bring":[148],"more":[149,173],"guidance":[150],"computer":[153],"scientists":[154,210],"confidence":[156],"pathologists,":[159],"towards":[160,426],"effective/efficient":[162],"daily":[163],"use.":[164],"Besides,":[165],"consistent":[167],"insights":[170],"will":[171],"likely":[174,380],"emerge":[176],"near":[179],"future":[180],"-":[181,188,215,332,340],"from":[182,438],"these":[183],"sophisticated":[184],"tools":[187],"back":[189],"pathologists--,":[192],"strengthening,":[193],"therefore,":[194],"interaction":[196],"between":[197,259],"different":[199,320,410],"actors":[200,321],"biomedical":[204],"ecosystem":[205],"(patients,":[206],"clinicians,":[207],"biologists,":[208],"engineers,":[209],"etc.).":[211],"Beside":[212],"going":[213],"digital/computational":[214],"virtual":[217],"slide":[218],"technology":[219],"demanding":[220],"new":[221],"workflows--,":[222],"Pathology":[223],"must":[224],"prepare":[225],"another":[227],"coming":[228],"revolution:":[229],"web":[231,330],"technologies":[232],"now":[233],"enable":[234],"knowledge":[236,300,334],"experts":[238],"stored":[241],"databases,":[243],"shared":[244],"through":[245],"Internet,":[247],"by":[250,398,405],"machines.":[251],"Traceability,":[252],"disambiguation":[253],"reports,":[255],"quality":[256],"monitoring,":[257],"interoperability":[258],"health":[260],"centers":[261],"are":[262,275,448],"some":[263],"associated":[266],"benefits":[267],"that":[268],"pathologists":[269],"were":[270],"seeking.":[271],"However,":[272],"major":[273],"changes":[274],"also":[276],"expected":[279],"relation":[282],"human":[284],"diagnosis":[285],"based":[288],"procedures.":[289],"Improving":[290],"on":[291,348,416],"former":[293],"imaging":[294,325,338],"platform":[295],"which":[296],"used":[297],"local":[299],"base":[301],"reasoning":[304],"engine":[305],"combine":[307],"image":[308],"processing":[309],"modules":[310],"into":[311],"higher":[312],"level":[313],"tasks,":[314],"we":[315],"propose":[316],"framework":[318,378],"where":[319,342],"histopathology":[324],"world":[326],"can":[327,352],"cooperate":[328],"services":[331,339],"exchanging":[333],"well":[336],"results":[344,422],"such":[346,358],"collaborations":[347],"diagnostic":[349],"related":[350],"tasks":[351],"evaluated":[354],"international":[356],"those":[360],"recently":[361],"organized":[362],"mitosis":[364],"detection,":[365],"nuclear":[366],"atypia,":[367],"or":[368],"tissue":[369],"architecture":[370],"context":[373],"cancer":[375],"grading.":[376],"offer":[382],"effective":[384],"context-guidance":[385],"Deep":[389],"Learning":[390],"approaches,":[391],"interesting":[394],"perspective":[396],"given":[397],"multi-task":[400],"(MTL)":[402],"paradigm,":[403],"distinguished":[404],"its":[406,413],"applicability":[407],"several":[409],"non-":[414],"reliance":[415],"specialized":[417],"architectures":[418],"demonstrated,":[423],"particular":[425],"problem":[428],"weak":[430],"supervision--,":[431],"issue":[433],"found":[434],"when":[435],"direct":[436],"links":[437],"terms":[440],"reports":[442],"corresponding":[444],"regions":[445],"within":[446],"images":[447],"missing.":[449]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}