{"id":"https://openalex.org/W2594499462","doi":"https://doi.org/10.1117/12.2256011","title":"DeepInfer: open-source deep learning deployment toolkit for image-guided therapy","display_name":"DeepInfer: open-source deep learning deployment toolkit for image-guided therapy","publication_year":2017,"publication_date":"2017-03-03","ids":{"openalex":"https://openalex.org/W2594499462","doi":"https://doi.org/10.1117/12.2256011","mag":"2594499462","pmid":"https://pubmed.ncbi.nlm.nih.gov/28615794"},"language":"en","primary_location":{"id":"doi:10.1117/12.2256011","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2256011","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042730944","display_name":"Alireza Mehrtash","orcid":"https://orcid.org/0000-0003-3703-5330"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["CA","US"],"is_corresponding":true,"raw_author_name":"Alireza Mehrtash","raw_affiliation_strings":["The Univ. of British Columbia (Canada)","Brigham and Women's Hospiital (United States)"],"affiliations":[{"raw_affiliation_string":"The Univ. of British Columbia (Canada)","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Brigham and Women's Hospiital (United States)","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043147671","display_name":"Mehran Pesteie","orcid":"https://orcid.org/0000-0001-6049-6149"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mehran Pesteie","raw_affiliation_strings":["The Univ. of British Columbia (Canada)"],"affiliations":[{"raw_affiliation_string":"The Univ. of British Columbia (Canada)","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034927364","display_name":"Jorden Hetherington","orcid":"https://orcid.org/0000-0002-2311-3898"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jorden Hetherington","raw_affiliation_strings":["The Univ. of British Columbia (Canada)"],"affiliations":[{"raw_affiliation_string":"The Univ. of British Columbia (Canada)","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011853933","display_name":"Peter A. Behringer","orcid":null},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter A. Behringer","raw_affiliation_strings":["Brigham and Women's Hospital (United States)"],"affiliations":[{"raw_affiliation_string":"Brigham and Women's Hospital (United States)","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091681491","display_name":"Tina Kapur","orcid":"https://orcid.org/0000-0003-3646-9508"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tina Kapur","raw_affiliation_strings":["Brigham and Women's Hospital (United States)"],"affiliations":[{"raw_affiliation_string":"Brigham and Women's Hospital (United States)","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102839531","display_name":"William M. Wells","orcid":"https://orcid.org/0000-0002-4279-8634"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William M. Wells","raw_affiliation_strings":["Brigham and Women's Hospital (United States)"],"affiliations":[{"raw_affiliation_string":"Brigham and Women's Hospital (United States)","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088844445","display_name":"Robert Rohling","orcid":"https://orcid.org/0000-0001-9026-8147"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robert Rohling","raw_affiliation_strings":["The Univ. of British Columbia (Canada)"],"affiliations":[{"raw_affiliation_string":"The Univ. of British Columbia (Canada)","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031919834","display_name":"Andriy Fedorov","orcid":"https://orcid.org/0000-0003-4806-9413"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andriy Fedorov","raw_affiliation_strings":["Brigham and Women's Hospital (United States)"],"affiliations":[{"raw_affiliation_string":"Brigham and Women's Hospital (United States)","institution_ids":["https://openalex.org/I1283280774"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023095072","display_name":"Purang Abolmaesumi","orcid":"https://orcid.org/0000-0002-7259-8609"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Purang Abolmaesumi","raw_affiliation_strings":["The Univ. of British Columbia (Canada)"],"affiliations":[{"raw_affiliation_string":"The Univ. of British Columbia (Canada)","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5042730944"],"corresponding_institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I141945490"],"apc_list":null,"apc_paid":null,"fwci":3.2567,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.9252505,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"10135","issue":null,"first_page":"101351K","last_page":"101351K"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8356561660766602},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.7845567464828491},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5463677644729614},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4626826345920563},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.429464191198349},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3609282374382019},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.20113873481750488},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.14807221293449402},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13939008116722107}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8356561660766602},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.7845567464828491},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5463677644729614},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4626826345920563},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.429464191198349},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3609282374382019},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.20113873481750488},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.14807221293449402},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13939008116722107}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2256011","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2256011","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:28615794","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28615794","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:europepmc.org:4316933","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5467894","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1901129140","https://openalex.org/W1964494236","https://openalex.org/W1970102785","https://openalex.org/W1975022113","https://openalex.org/W2026616100","https://openalex.org/W2086667300","https://openalex.org/W2087795629","https://openalex.org/W2092402742","https://openalex.org/W2098237035","https://openalex.org/W2142897853","https://openalex.org/W2143345254","https://openalex.org/W2155893237","https://openalex.org/W2271840356","https://openalex.org/W2296335794","https://openalex.org/W2310992461","https://openalex.org/W2323929895","https://openalex.org/W2342591535","https://openalex.org/W2343172899","https://openalex.org/W2344328023","https://openalex.org/W2384495648","https://openalex.org/W2422852360","https://openalex.org/W2460336317","https://openalex.org/W2542911914","https://openalex.org/W3104085283","https://openalex.org/W4248660399","https://openalex.org/W6639824700","https://openalex.org/W6680730478","https://openalex.org/W6694517276","https://openalex.org/W6697144307","https://openalex.org/W6704282751","https://openalex.org/W6704415777","https://openalex.org/W6717710328","https://openalex.org/W6718957701"],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W2755342338","https://openalex.org/W2058170566","https://openalex.org/W2036807459","https://openalex.org/W2775347418","https://openalex.org/W1969923398","https://openalex.org/W2166024367","https://openalex.org/W2772917594","https://openalex.org/W3009238340"],"abstract_inverted_index":{"Deep":[0],"learning":[1,85,91,121,146],"models":[2,21,38,86,104,147],"have":[3,60,105],"outperformed":[4],"some":[5],"of":[6,16,31,97,159,202,213],"the":[7,34,110,118,149,176,186,200,214],"previous":[8],"state-of-the-art":[9,119],"approaches":[10],"in":[11,64,122,127,204,217],"medical":[12,69,123,152],"image":[13,50,70,77,153],"analysis.":[14],"Instead":[15],"using":[17],"hand-engineered":[18],"features,":[19],"deep":[20,37,84,103,145],"attempt":[22],"to":[23,42,54,73,169,182],"automatically":[24],"extract":[25],"hierarchical":[26],"representations":[27],"at":[28],"multiple":[29],"levels":[30],"abstraction":[32],"from":[33,175],"data.":[35],"Therefore,":[36],"are":[39],"usually":[40],"considered":[41],"be":[43],"more":[44],"flexible":[45],"and":[46,67,80,93,125,143,166,179,211],"robust":[47],"solutions":[48],"for":[49,141,188,207,220],"analysis":[51,71,154],"problems":[52],"compared":[53],"conventional":[55],"computer":[56],"vision":[57],"models.":[58],"They":[59],"demonstrated":[61],"significant":[62],"improvements":[63],"computer-aided":[65],"diagnosis":[66],"automatic":[68],"applied":[72],"such":[74],"tasks":[75],"as":[76],"segmentation,":[78],"classification":[79],"registration.":[81],"However,":[82],"deploying":[83,144],"often":[87],"has":[88],"a":[89,115,157,171],"steep":[90],"curve":[92],"requires":[94],"detailed":[95],"knowledge":[96],"various":[98],"software":[99,189],"packages.":[100],"Thus,":[101],"many":[102],"not":[106],"been":[107],"integrated":[108],"into":[109],"clinical":[111,128,164],"research":[112,129],"workflows":[113],"causing":[114],"gap":[116],"between":[117],"machine":[120],"applications":[124],"evaluation":[126],"procedures.":[130],"In":[131],"this":[132],"paper,":[133],"we":[134,198],"propose":[135],"\"DeepInfer\"":[136],"-":[137],"an":[138],"open-source":[139],"toolkit":[140],"developing":[142],"within":[148],"3D":[150,218],"Slicer":[151],"platform.":[155],"Utilizing":[156],"repository":[158],"task-specific":[160],"models,":[161],"DeepInfer":[162,203],"allows":[163],"researchers":[165],"biomedical":[167],"engineers":[168],"deploy":[170],"trained":[172],"model":[173],"selected":[174],"public":[177],"registry,":[178],"apply":[180],"it":[181],"new":[183],"data":[184],"without":[185],"need":[187],"development":[190],"or":[191],"configuration.":[192],"As":[193],"two":[194],"practical":[195],"use":[196],"cases,":[197],"demonstrate":[199],"application":[201],"prostate":[205],"segmentation":[206],"targeted":[208],"MRI-guided":[209],"biopsy":[210],"identification":[212],"target":[215],"plane":[216],"ultrasound":[219],"spinal":[221],"injections.":[222]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
