{"id":"https://openalex.org/W2594503214","doi":"https://doi.org/10.1117/12.2255627","title":"A computational framework to detect normal and tuberculosis infected lung from H and E-stained whole slide images","display_name":"A computational framework to detect normal and tuberculosis infected lung from H and E-stained whole slide images","publication_year":2017,"publication_date":"2017-03-01","ids":{"openalex":"https://openalex.org/W2594503214","doi":"https://doi.org/10.1117/12.2255627","mag":"2594503214","pmid":"https://pubmed.ncbi.nlm.nih.gov/38347946"},"language":"en","primary_location":{"id":"doi:10.1117/12.2255627","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2255627","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10860644/pdf/nihms-983286.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034159054","display_name":"Muhammad Khalid Khan Niazi","orcid":"https://orcid.org/0000-0002-1278-7512"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"M. Khalid Khan Niazi","raw_affiliation_strings":["The Ohio State Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"The Ohio State Univ. (United States)","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010025683","display_name":"Gillian Beamer","orcid":"https://orcid.org/0000-0001-6782-4424"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gillian Beamer","raw_affiliation_strings":["Tufts Univ.  (United States)","Tufts Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Tufts Univ.  (United States)","institution_ids":["https://openalex.org/I121934306"]},{"raw_affiliation_string":"Tufts Univ. (United States)","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077316017","display_name":"Metin N. G\u00fcrcan","orcid":"https://orcid.org/0000-0002-2421-8229"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Metin N. Gurcan","raw_affiliation_strings":["The Ohio State Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"The Ohio State Univ. (United States)","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034159054"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":null,"apc_paid":null,"fwci":1.4049,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.84666585,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10140","issue":null,"first_page":"101400J","last_page":"101400J"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6865174174308777},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.683946430683136},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.60591721534729},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5673589706420898},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.5270535945892334},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5021634101867676},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.4519323408603668},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.4288055896759033},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.35952028632164},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15746113657951355},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14942187070846558}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6865174174308777},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.683946430683136},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.60591721534729},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5673589706420898},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.5270535945892334},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5021634101867676},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.4519323408603668},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.4288055896759033},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.35952028632164},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15746113657951355},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14942187070846558},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2255627","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2255627","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:38347946","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38347946","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10860644","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10860644","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10860644/pdf/nihms-983286.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10860644","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10860644","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10860644/pdf/nihms-983286.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6700000166893005}],"awards":[{"id":"https://openalex.org/G2154775583","display_name":null,"funder_award_id":"U24CA199374","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G36614667","display_name":null,"funder_award_id":"CA016058","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4182933148","display_name":null,"funder_award_id":"CA016058","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4510508692","display_name":null,"funder_award_id":"U24CA199374","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5573027316","display_name":null,"funder_award_id":"P30 CA016058","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7684049282","display_name":null,"funder_award_id":"P30 CA016058","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8166182403","display_name":null,"funder_award_id":"P30 CA016058","funder_id":"https://openalex.org/F4320309374","funder_display_name":"Ohio State University"},{"id":"https://openalex.org/G8788845912","display_name":null,"funder_award_id":"R21 AI115038","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309374","display_name":"Ohio State University","ror":"https://ror.org/00rs6vg23"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2594503214.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1504312910","https://openalex.org/W1521415669","https://openalex.org/W1561442812","https://openalex.org/W1578387260","https://openalex.org/W1915399536","https://openalex.org/W2003387974","https://openalex.org/W2010943731","https://openalex.org/W2037402988","https://openalex.org/W2076063813","https://openalex.org/W2131393876","https://openalex.org/W4232838803","https://openalex.org/W4234793439","https://openalex.org/W6633448853","https://openalex.org/W6659995096"],"related_works":["https://openalex.org/W4308058527","https://openalex.org/W2972094210","https://openalex.org/W2110949356","https://openalex.org/W1538374398","https://openalex.org/W2050407936","https://openalex.org/W2042252940","https://openalex.org/W2411061500","https://openalex.org/W3160640465","https://openalex.org/W2394233015","https://openalex.org/W4206946219"],"abstract_inverted_index":{"Accurate":[0],"detection":[1,24],"and":[2,25,44,73,96,116,174,194],"quantification":[3,26,84],"of":[4,11,16,27,40,85,142],"normal":[5,28,43,115,173,193],"lung":[6,29,170,196],"tissue":[7,55,63,86,112,147],"in":[8,83,104,138,154,161],"the":[9,32,68,155,182],"context":[10],"<i>Mycobacterium":[12],"tuberculosis</i>":[13],"infection":[14],"is":[15],"interest":[17,41],"from":[18,57,149],"a":[19,49,162],"biological":[20],"perspective.":[21],"The":[22,123,133,158],"automatic":[23],"will":[30],"allow":[31],"biologists":[33,189],"to":[34,52,76],"focus":[35],"more":[36],"intensely":[37],"on":[38,128,190],"regions":[39],"within":[42],"infected":[45,117,175,195],"tissues.":[46],"We":[47,107],"present":[48],"computational":[50,124,135],"framework":[51,93,125,136,159,184],"extract":[53],"individual":[54,111,146,169],"sections":[56,113,148,171],"whole":[58,130,151],"slide":[59,131,152],"images":[60,153],"having":[61],"multiple":[62],"sections.":[64,87],"It":[65],"automatically":[66],"detects":[67],"background,":[69],"red":[70],"blood":[71],"cells":[72],"handwritten":[74],"digits":[75],"bring":[77],"efficiency":[78],"as":[79,81,99],"well":[80],"accuracy":[82,141,165],"For":[88],"efficiency,":[89],"we":[90],"model":[91],"our":[92],"with":[94,188],"logical":[95],"morphological":[97],"operations":[98],"they":[100],"can":[101],"be":[102],"performed":[103],"linear":[105],"time.":[106],"further":[108],"divide":[109],"these":[110],"into":[114,172],"areas":[118],"using":[119],"deep":[120],"neural":[121],"network.":[122],"was":[126],"trained":[127],"60":[129],"images.":[132],"proposed":[134,183],"resulted":[137,160],"an":[139],"overall":[140],"99.2%":[143],"when":[144],"extracting":[145],"120":[150],"test":[156],"dataset.":[157],"relatively":[163],"higher":[164],"(99.7%)":[166],"while":[167],"classifying":[168],"areas.":[176,197],"Our":[177],"preliminary":[178],"findings":[179],"suggest":[180],"that":[181],"has":[185],"good":[186],"agreement":[187],"how":[191],"define":[192]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2017-03-16T00:00:00"}
