{"id":"https://openalex.org/W2592557609","doi":"https://doi.org/10.1117/12.2254690","title":"Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI","display_name":"Identifying HIV associated neurocognitive disorder using large-scale Granger causality analysis on resting-state functional MRI","publication_year":2017,"publication_date":"2017-02-24","ids":{"openalex":"https://openalex.org/W2592557609","doi":"https://doi.org/10.1117/12.2254690","mag":"2592557609","pmid":"https://pubmed.ncbi.nlm.nih.gov/29167591"},"language":"en","primary_location":{"id":"doi:10.1117/12.2254690","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2254690","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5695922","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068409005","display_name":"Adora M. DSouza","orcid":"https://orcid.org/0000-0001-5656-0021"},"institutions":[{"id":"https://openalex.org/I5388228","display_name":"University of Rochester","ror":"https://ror.org/022kthw22","country_code":"US","type":"education","lineage":["https://openalex.org/I5388228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adora M. DSouza","raw_affiliation_strings":["Univ. of Rochester (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. of Rochester (United States)","institution_ids":["https://openalex.org/I5388228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022256468","display_name":"Anas Z. Abidin","orcid":"https://orcid.org/0000-0003-0032-0664"},"institutions":[{"id":"https://openalex.org/I5388228","display_name":"University of Rochester","ror":"https://ror.org/022kthw22","country_code":"US","type":"education","lineage":["https://openalex.org/I5388228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anas Z. Abidin","raw_affiliation_strings":["Univ. of Rochester (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. of Rochester (United States)","institution_ids":["https://openalex.org/I5388228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019141599","display_name":"Lutz Leistritz","orcid":null},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lutz Leistritz","raw_affiliation_strings":["Friedrich-Schiller-Univ. Jena (Germany)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Friedrich-Schiller-Univ. Jena (Germany)","institution_ids":["https://openalex.org/I76198965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036396088","display_name":"Axel Wism\u00fcller","orcid":null},"institutions":[{"id":"https://openalex.org/I5388228","display_name":"University of Rochester","ror":"https://ror.org/022kthw22","country_code":"US","type":"education","lineage":["https://openalex.org/I5388228"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Axel Wism\u00fcller","raw_affiliation_strings":["Univ. of Rochester (United States)","Ludwig Maximilian Univ. (Germany)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. of Rochester (United States)","institution_ids":["https://openalex.org/I5388228"]},{"raw_affiliation_string":"Ludwig Maximilian Univ. (Germany)","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4387,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.64765939,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"10133","issue":null,"first_page":"101330M","last_page":"101330M"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/granger-causality","display_name":"Granger causality","score":0.8146035075187683},{"id":"https://openalex.org/keywords/neurocognitive","display_name":"Neurocognitive","score":0.7314273715019226},{"id":"https://openalex.org/keywords/resting-state-fmri","display_name":"Resting state fMRI","score":0.7249277234077454},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5148671865463257},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41187554597854614},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.40355607867240906},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.33716219663619995},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.32520532608032227},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.270352840423584},{"id":"https://openalex.org/keywords/cognition","display_name":"Cognition","score":0.1290377974510193},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.09154939651489258}],"concepts":[{"id":"https://openalex.org/C129824826","wikidata":"https://www.wikidata.org/wiki/Q2630107","display_name":"Granger causality","level":2,"score":0.8146035075187683},{"id":"https://openalex.org/C172467417","wikidata":"https://www.wikidata.org/wiki/Q1670397","display_name":"Neurocognitive","level":3,"score":0.7314273715019226},{"id":"https://openalex.org/C66324658","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Resting state fMRI","level":2,"score":0.7249277234077454},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5148671865463257},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41187554597854614},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.40355607867240906},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.33716219663619995},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.32520532608032227},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.270352840423584},{"id":"https://openalex.org/C169900460","wikidata":"https://www.wikidata.org/wiki/Q2200417","display_name":"Cognition","level":2,"score":0.1290377974510193},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.09154939651489258},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2254690","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2254690","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:29167591","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29167591","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5695922","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5695922","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:5695922","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5695922","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G6007668292","display_name":null,"funder_award_id":"R01 DA034977","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W133892329","https://openalex.org/W1507544250","https://openalex.org/W1607114662","https://openalex.org/W1660467310","https://openalex.org/W1964107394","https://openalex.org/W1968222074","https://openalex.org/W1972228177","https://openalex.org/W1978215483","https://openalex.org/W1997269994","https://openalex.org/W1998945666","https://openalex.org/W2006096283","https://openalex.org/W2011988161","https://openalex.org/W2013235441","https://openalex.org/W2017345738","https://openalex.org/W2039434802","https://openalex.org/W2044713450","https://openalex.org/W2058046532","https://openalex.org/W2060721178","https://openalex.org/W2061690543","https://openalex.org/W2096545550","https://openalex.org/W2103961356","https://openalex.org/W2123923307","https://openalex.org/W2126918459","https://openalex.org/W2130107054","https://openalex.org/W2148585001","https://openalex.org/W2149018240","https://openalex.org/W2168372372","https://openalex.org/W2169397963","https://openalex.org/W2171191802","https://openalex.org/W2171546147","https://openalex.org/W2172180476","https://openalex.org/W2327725366","https://openalex.org/W2464525596","https://openalex.org/W2494820207","https://openalex.org/W2593687779","https://openalex.org/W3099014884","https://openalex.org/W4244838597","https://openalex.org/W4252143507","https://openalex.org/W6653524013","https://openalex.org/W6674352590","https://openalex.org/W6684817826","https://openalex.org/W6685179704","https://openalex.org/W6734509241","https://openalex.org/W6785241104"],"related_works":["https://openalex.org/W3185423717","https://openalex.org/W2560983496","https://openalex.org/W2011260154","https://openalex.org/W2277826541","https://openalex.org/W2414069397","https://openalex.org/W2315917474","https://openalex.org/W2123461383","https://openalex.org/W4401660002","https://openalex.org/W2050928772","https://openalex.org/W3121434756"],"abstract_inverted_index":{"We":[0,188],"investigate":[1],"the":[2,30,93,134,180,245],"applicability":[3],"of":[4,13,19,32,44,49,73,89,92,130,174,184],"large-scale":[5],"Granger":[6,198,240],"Causality":[7],"(lsGC)":[8],"for":[9,35,52,100,164],"extracting":[10],"a":[11,37,59,87,143,190,196],"measure":[12],"multivariate":[14,42,214],"information":[15],"flow":[16],"between":[17,65,122,232],"pairs":[18],"regional":[20],"brain":[21,119,139,234],"activities":[22],"from":[23,244],"resting-state":[24],"functional":[25],"MRI":[26],"(fMRI)":[27],"and":[28,55,68,125,176,209],"test":[29],"effectiveness":[31],"these":[33],"measures":[34,43],"predicting":[36],"disease":[38],"state.":[39],"Such":[40],"pairwise":[41],"interaction":[45,136,230],"provide":[46],"high-dimensional":[47],"representations":[48],"connectivity":[50,120,158,217],"profiles":[51],"each":[53],"subject":[54],"are":[56],"used":[57],"in":[58,81,118,229],"machine":[60],"learning":[61,145],"task":[62],"to":[63,156,186,216,225,238],"distinguish":[64],"healthy":[66,123],"controls":[67],"individuals":[69],"presenting":[70,127],"with":[71,128,171],"symptoms":[72,129],"HIV":[74,90],"Associated":[75],"Neurocognitive":[76],"Disorder":[77],"(HAND).":[78],"Cognitive":[79],"impairment":[80,103],"several":[82],"domains":[83],"can":[84],"occur":[85],"as":[86],"result":[88],"infection":[91],"central":[94],"nervous":[95],"system.":[96],"The":[97],"current":[98],"paradigm":[99],"assessing":[101],"such":[102],"is":[104,223],"through":[105],"neuropsychological":[106],"testing.":[107],"With":[108],"fMRI":[109],"data":[110],"analysis,":[111],"we":[112,141],"aim":[113],"at":[114],"non-invasively":[115],"capturing":[116],"differences":[117],"patterns":[121,137,231],"subjects":[124,126],"HAND.":[131],"To":[132],"classify":[133],"extracted":[135],"among":[138],"regions,":[140],"use":[142],"prototype-based":[144],"algorithm":[146],"called":[147],"Generalized":[148],"Matrix":[149],"Learning":[150],"Vector":[151],"Quantization":[152],"(GMLVQ).":[153],"Our":[154],"approach":[155,200,222],"characterize":[157],"using":[159,212],"lsGC":[160],"followed":[161],"by":[162],"GMLVQ":[163],"subsequent":[165],"classification":[166],"yields":[167],"good":[168],"prediction":[169],"results":[170],"an":[172,177],"accuracy":[173,208],"87%":[175],"area":[178],"under":[179],"ROC":[181],"curve":[182],"(AUC)":[183],"up":[185],"0.90.":[187],"obtain":[189],"statistically":[191],"significant":[192],"improvement":[193],"(p&lt;0.01)":[194],"over":[195],"conventional":[197,239],"causality":[199,241],"(accuracy":[201],"=":[202,205],"0.76,":[203],"AUC":[204,210],"0.74).":[206],"High":[207],"values":[211],"our":[213,221],"method":[215],"analysis":[218,242],"suggests":[219],"that":[220],"able":[224],"better":[226],"capture":[227],"changes":[228],"different":[233],"regions":[235],"when":[236],"compared":[237],"known":[243],"literature.":[246]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
