{"id":"https://openalex.org/W2312154233","doi":"https://doi.org/10.1117/12.2217709","title":"Multi-object model-based multi-atlas segmentation for rodent brains using dense discrete correspondences","display_name":"Multi-object model-based multi-atlas segmentation for rodent brains using dense discrete correspondences","publication_year":2016,"publication_date":"2016-03-21","ids":{"openalex":"https://openalex.org/W2312154233","doi":"https://doi.org/10.1117/12.2217709","mag":"2312154233","pmid":"https://pubmed.ncbi.nlm.nih.gov/27065200"},"language":"en","primary_location":{"id":"doi:10.1117/12.2217709","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2217709","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014904502","display_name":"Joohwi Lee","orcid":"https://orcid.org/0000-0002-4263-471X"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joohwi Lee","raw_affiliation_strings":["The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091363743","display_name":"Ilwoo Lyu","orcid":"https://orcid.org/0000-0001-5868-9603"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ilwoo Lyu","raw_affiliation_strings":["The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065838160","display_name":"Martin Styner","orcid":"https://orcid.org/0000-0002-8747-5118"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Styner","raw_affiliation_strings":["The Univ. of North Carolina at Chapel Hill (United States)"],"affiliations":[{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014904502"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":null,"apc_paid":null,"fwci":0.501,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.70718445,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"9784","issue":null,"first_page":"97840Q","last_page":"97840Q"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.807145357131958},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7918598651885986},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7358896732330322},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.6714259386062622},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.6338975429534912},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6062744855880737},{"id":"https://openalex.org/keywords/scale-space-segmentation","display_name":"Scale-space segmentation","score":0.5572773814201355},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5499070882797241},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5222695469856262},{"id":"https://openalex.org/keywords/segmentation-based-object-categorization","display_name":"Segmentation-based object categorization","score":0.4897472858428955},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.44289109110832214},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.16726183891296387},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.07963752746582031},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0648123025894165}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.807145357131958},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7918598651885986},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7358896732330322},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6714259386062622},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.6338975429534912},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6062744855880737},{"id":"https://openalex.org/C65885262","wikidata":"https://www.wikidata.org/wiki/Q7429708","display_name":"Scale-space segmentation","level":4,"score":0.5572773814201355},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5499070882797241},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5222695469856262},{"id":"https://openalex.org/C25694479","wikidata":"https://www.wikidata.org/wiki/Q7446278","display_name":"Segmentation-based object categorization","level":5,"score":0.4897472858428955},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.44289109110832214},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.16726183891296387},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.07963752746582031},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0648123025894165},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2217709","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2217709","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:27065200","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27065200","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:europepmc.org:3795173","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4825178","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W337099942","https://openalex.org/W1537148302","https://openalex.org/W1826158161","https://openalex.org/W1840108815","https://openalex.org/W1909894032","https://openalex.org/W1996645992","https://openalex.org/W1997732141","https://openalex.org/W2000801929","https://openalex.org/W2064358322","https://openalex.org/W2113498752","https://openalex.org/W2113576511","https://openalex.org/W2114740909","https://openalex.org/W2117340355","https://openalex.org/W4206287650","https://openalex.org/W4206359583","https://openalex.org/W4230269337","https://openalex.org/W6611468311","https://openalex.org/W6638740917","https://openalex.org/W6639999061","https://openalex.org/W6650408070"],"related_works":["https://openalex.org/W3144569342","https://openalex.org/W2945274617","https://openalex.org/W2185902295","https://openalex.org/W2103507220","https://openalex.org/W4205800335","https://openalex.org/W2055202857","https://openalex.org/W2371519352","https://openalex.org/W2386644571","https://openalex.org/W2372421320","https://openalex.org/W2551987074"],"abstract_inverted_index":{"The":[0,44,155],"delineation":[1],"of":[2,46,61,67,80,97,109,130],"rodent":[3],"brain":[4,153],"structures":[5],"is":[6,70,157],"challenging":[7],"due":[8,29],"to":[9,20,30,33,73,103,146],"low-contrast":[10],"multiple":[11,35,47],"cortical":[12],"and":[13,49,59,89,107,149],"subcortical":[14],"organs":[15,36],"that":[16,175],"are":[17],"closely":[18],"interfacing":[19],"each":[21],"other.":[22],"Atlas-based":[23],"segmentation":[24,69,79,96,118,156,185],"has":[25,54],"been":[26],"widely":[27,189],"employed":[28],"its":[31],"ability":[32],"delineate":[34],"at":[37],"the":[38,57,65,78,95,105,161,176],"same":[39],"time":[40],"via":[41],"image":[42,92],"registration.":[43],"use":[45],"atlases":[48,126],"subsequent":[50],"label":[51,169],"fusion":[52,170],"techniques":[53],"further":[55],"improved":[56],"robustness":[58,108],"accuracy":[60,66,106,182],"atlas-based":[62,68,110],"segmentation.":[63],"However,":[64],"still":[71],"prone":[72],"registration":[74,192],"errors;":[75],"for":[76],"example,":[77],"<i>in":[81],"vivo</i>":[82],"MR":[83],"images":[84],"can":[85],"be":[86],"less":[87],"accurate":[88],"robust":[90],"against":[91],"artifacts":[93],"than":[94,183],"<i>post":[98],"mortem</i>":[99],"images.":[100],"In":[101],"order":[102,145],"improve":[104],"segmentation,":[111],"we":[112],"propose":[113],"a":[114,128,136,164,188],"multi-object,":[115],"model-based,":[116],"multi-atlas":[117],"method.":[119],"We":[120,134],"first":[121],"establish":[122],"spatial":[123],"correspondences":[124],"across":[125],"using":[127,141],"set":[129],"dense":[131],"pseudo-landmark":[132],"particles.":[133],"build":[135],"multi-object":[137],"point":[138],"distribution":[139],"model":[140,162],"those":[142],"particles":[143],"in":[144,180],"capture":[147],"inter-":[148],"intra-subject":[150],"variation":[151],"among":[152],"structures.":[154],"obtained":[158],"by":[159,168],"fitting":[160],"into":[163],"subject":[165],"image,":[166],"followed":[167],"process.":[171],"Our":[172],"result":[173],"shows":[174],"proposed":[177],"method":[178],"resulted":[179],"greater":[181],"comparable":[184],"methods,":[186],"including":[187],"used":[190],"ANTs":[191],"tool.":[193]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
