{"id":"https://openalex.org/W2333683688","doi":"https://doi.org/10.1117/12.2217325","title":"A 3D high resolution ex vivo white matter atlas of the common squirrel monkey (<i>saimiri sciureus</i>) based on diffusion tensor imaging","display_name":"A 3D high resolution ex vivo white matter atlas of the common squirrel monkey (<i>saimiri sciureus</i>) based on diffusion tensor imaging","publication_year":2016,"publication_date":"2016-03-21","ids":{"openalex":"https://openalex.org/W2333683688","doi":"https://doi.org/10.1117/12.2217325","mag":"2333683688","pmid":"https://pubmed.ncbi.nlm.nih.gov/27064328"},"language":"en","primary_location":{"id":"doi:10.1117/12.2217325","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2217325","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031488038","display_name":"Yurui Gao","orcid":"https://orcid.org/0000-0002-4339-5351"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yurui Gao","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055625757","display_name":"Prasanna Parvathaneni","orcid":"https://orcid.org/0000-0001-8813-2494"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prasanna Parvathaneni","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056838937","display_name":"Kurt G. Schilling","orcid":"https://orcid.org/0000-0003-3686-7645"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kurt G. Schilling","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090559873","display_name":"Feng Wang","orcid":"https://orcid.org/0000-0002-8965-7708"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feng Wang","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060726223","display_name":"Iwona Stepniewska","orcid":"https://orcid.org/0000-0001-6680-1845"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Iwona Stepniewska","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004320806","display_name":"Zhoubing Xu","orcid":"https://orcid.org/0000-0002-8777-0977"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhoubing Xu","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063342217","display_name":"Ann S. Choe","orcid":"https://orcid.org/0000-0001-7352-1489"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ann S. Choe","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075870288","display_name":"Zhaohua Ding","orcid":"https://orcid.org/0000-0002-1805-2955"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhaohua Ding","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016773409","display_name":"John C. Gore","orcid":"https://orcid.org/0000-0002-9480-0900"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John C. Gore","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036968518","display_name":"Li Min Chen","orcid":"https://orcid.org/0000-0001-9662-1925"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Li min Chen","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075735203","display_name":"Bennett A. Landman","orcid":"https://orcid.org/0000-0001-5733-2127"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bennett A. Landman","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044056811","display_name":"Adam W. Anderson","orcid":"https://orcid.org/0000-0002-3788-6138"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam W. Anderson","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5031488038"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":null,"apc_paid":null,"fwci":1.94969876,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.86018227,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9784","issue":null,"first_page":"97843K","last_page":"97843K"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/squirrel-monkey","display_name":"Squirrel monkey","score":0.7708595395088196},{"id":"https://openalex.org/keywords/saimiri-sciureus","display_name":"Saimiri sciureus","score":0.7268540859222412},{"id":"https://openalex.org/keywords/diffusion-mri","display_name":"Diffusion MRI","score":0.6604861617088318},{"id":"https://openalex.org/keywords/white-matter","display_name":"White matter","score":0.6260272860527039},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.5941992402076721},{"id":"https://openalex.org/keywords/brain-atlas","display_name":"Brain atlas","score":0.5536148548126221},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.522986650466919},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47182732820510864},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.4402492642402649},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.4372252821922302},{"id":"https://openalex.org/keywords/spatial-normalization","display_name":"Spatial normalization","score":0.419587105512619},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.29051870107650757},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2661495804786682},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.2616705298423767},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.23854917287826538},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16249549388885498}],"concepts":[{"id":"https://openalex.org/C2776030879","wikidata":"https://www.wikidata.org/wiki/Q309200","display_name":"Squirrel monkey","level":2,"score":0.7708595395088196},{"id":"https://openalex.org/C3020811242","wikidata":"https://www.wikidata.org/wiki/Q65091688","display_name":"Saimiri sciureus","level":3,"score":0.7268540859222412},{"id":"https://openalex.org/C149550507","wikidata":"https://www.wikidata.org/wiki/Q899360","display_name":"Diffusion MRI","level":3,"score":0.6604861617088318},{"id":"https://openalex.org/C2781192897","wikidata":"https://www.wikidata.org/wiki/Q822050","display_name":"White matter","level":3,"score":0.6260272860527039},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.5941992402076721},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.5536148548126221},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.522986650466919},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47182732820510864},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.4402492642402649},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.4372252821922302},{"id":"https://openalex.org/C116580362","wikidata":"https://www.wikidata.org/wiki/Q3878457","display_name":"Spatial normalization","level":3,"score":0.419587105512619},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.29051870107650757},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2661495804786682},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.2616705298423767},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.23854917287826538},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16249549388885498},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2217325","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2217325","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:27064328","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27064328","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:europepmc.org:3795220","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4825691","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W221935897","https://openalex.org/W599620915","https://openalex.org/W1577528636","https://openalex.org/W1970822013","https://openalex.org/W1970928383","https://openalex.org/W1971687696","https://openalex.org/W1972543511","https://openalex.org/W1999890357","https://openalex.org/W2050943211","https://openalex.org/W2052644075","https://openalex.org/W2078237160","https://openalex.org/W2079795772","https://openalex.org/W2106763716","https://openalex.org/W2134035197","https://openalex.org/W2137915146","https://openalex.org/W2139078792","https://openalex.org/W2142568997","https://openalex.org/W2296621543","https://openalex.org/W2305716341","https://openalex.org/W2764753979","https://openalex.org/W4205158112","https://openalex.org/W4235770099"],"related_works":["https://openalex.org/W2021941342","https://openalex.org/W2011793707","https://openalex.org/W2017555033","https://openalex.org/W2417146342","https://openalex.org/W2410971558","https://openalex.org/W2414811435","https://openalex.org/W2409580079","https://openalex.org/W2470872152","https://openalex.org/W2465872734","https://openalex.org/W2333683688"],"abstract_inverted_index":{"Modern":[0],"magnetic":[1],"resonance":[2],"imaging":[3,123,155],"(MRI)":[4],"brain":[5],"atlases":[6,75],"are":[7,20],"high":[8],"quality":[9,220],"3-D":[10],"volumes":[11],"with":[12,178],"specific":[13],"structures":[14],"labeled":[15],"in":[16,22,61,92,157,172,201],"the":[17,62,65,72,78,106,115,140,166,184,188,192,222,231,236,240,251],"volume.":[18],"Atlases":[19],"essential":[21],"providing":[23,37],"a":[24,110,121,173],"common":[25,66,81,116,202],"space":[26,124],"for":[27,33,49,70,90,114,119],"interpretation":[28],"of":[29,109,169,195,217,224,243],"results":[30],"across":[31,199,228],"studies,":[32,94],"anatomical":[34,97,167],"education,":[35],"and":[36,52,100,125,160,187,221],"quantitative":[38],"image-based":[39],"navigation.":[40],"Extensive":[41],"work":[42,104],"has":[43,84],"been":[44,85,130],"devoted":[45],"to":[46,139,164,212,215,250],"atlas":[47,113,144],"construction":[48],"humans,":[50],"macaque,":[51],"several":[53],"non-primate":[54],"species":[55],"(e.g.,":[56],"rat).":[57],"One":[58],"notable":[59],"gap":[60],"literature":[63],"is":[64],"squirrel":[67,82,117],"monkey":[68,83],"-":[69],"which":[71,120],"primary":[73],"published":[74],"date":[76],"from":[77,210,235],"1960's.":[79],"The":[80,142,206],"used":[86],"extensively":[87],"as":[88],"surrogate":[89],"humans":[91],"biomedical":[93],"given":[95],"its":[96],"neuro-system":[98],"similarities":[99],"practical":[101],"considerations.":[102],"This":[103,133],"describes":[105],"continued":[107],"development":[108],"multi-modal":[111],"MRI":[112],"monkey,":[118],"structural":[122],"gray":[126],"matter":[127,137,148],"parcels":[128],"have":[129],"previously":[131],"constructed.":[132],"study":[134],"adds":[135],"white":[136,147],"tracts":[138,186],"atlas.":[141,252],"new":[143],"includes":[145],"49":[146],"(WM)":[149],"tracts,":[150],"defined":[151],"using":[152],"diffusion":[153],"tensor":[154],"(DTI)":[156],"three":[158],"animals":[159,200,238],"combines":[161],"these":[162,170],"data":[163],"define":[165],"locations":[168,242],"tracks":[171],"standardized":[174],"coordinate":[175],"system":[176],"compatible":[177],"previous":[179],"development.":[180],"An":[181],"anatomist":[182],"reviewed":[183],"resulting":[185],"inter-animal":[189],"reproducibility":[190],"(i.e.,":[191],"Dice":[193,207],"index":[194],"each":[196],"WM":[197,225,233,244],"parcel":[198],"space)":[203],"was":[204],"assessed.":[205],"indices":[208],"range":[209],"0.05":[211],"0.80":[213],"due":[214],"differences":[216],"local":[218],"registration":[219],"variation":[223],"tract":[226],"position":[227],"individuals.":[229],"However,":[230],"combined":[232],"labels":[234],"3":[237],"represent":[239],"general":[241],"parcels,":[245],"adding":[246],"basic":[247],"connectivity":[248],"information":[249]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
