{"id":"https://openalex.org/W2302994076","doi":"https://doi.org/10.1117/12.2216604","title":"Combining multi-atlas segmentation with brain surface estimation","display_name":"Combining multi-atlas segmentation with brain surface estimation","publication_year":2016,"publication_date":"2016-03-21","ids":{"openalex":"https://openalex.org/W2302994076","doi":"https://doi.org/10.1117/12.2216604","mag":"2302994076","pmid":"https://pubmed.ncbi.nlm.nih.gov/27127332"},"language":"en","primary_location":{"id":"doi:10.1117/12.2216604","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2216604","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4845967","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067191302","display_name":"Yuankai Huo","orcid":"https://orcid.org/0000-0002-2096-8065"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yuankai Huo","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075622613","display_name":"Aaron Carass","orcid":"https://orcid.org/0000-0003-4939-5085"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Carass","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003112344","display_name":"Susan M. Resnick","orcid":"https://orcid.org/0000-0003-1115-7145"},"institutions":[{"id":"https://openalex.org/I4210136897","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210136897"]},{"id":"https://openalex.org/I4210136305","display_name":"Institute on Aging","ror":"https://ror.org/0390vdb22","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210136305"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan M. Resnick","raw_affiliation_strings":["National Institute on Aging (United States)"],"affiliations":[{"raw_affiliation_string":"National Institute on Aging (United States)","institution_ids":["https://openalex.org/I4210136305","https://openalex.org/I4210136897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005891853","display_name":"Dzung L. Pham","orcid":"https://orcid.org/0000-0003-0053-2034"},"institutions":[{"id":"https://openalex.org/I4210100506","display_name":"Jackson Foundation","ror":"https://ror.org/00jkq3860","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210100506"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dzung L. Pham","raw_affiliation_strings":["Henry Jackson Foundation (United States)"],"affiliations":[{"raw_affiliation_string":"Henry Jackson Foundation (United States)","institution_ids":["https://openalex.org/I4210100506"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066682675","display_name":"Jerry L. Prince","orcid":"https://orcid.org/0000-0002-6553-0876"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jerry L. Prince","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075735203","display_name":"Bennett A. Landman","orcid":"https://orcid.org/0000-0001-5733-2127"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bennett A. Landman","raw_affiliation_strings":["Vanderbilt Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Vanderbilt Univ. (United States)","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5067191302"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":null,"apc_paid":null,"fwci":2.5395,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.92927871,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9784","issue":null,"first_page":"97840E","last_page":"97840E"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8726702928543091},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6773385405540466},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.6740288734436035},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.664914608001709},{"id":"https://openalex.org/keywords/brain-atlas","display_name":"Brain atlas","score":0.5754181742668152},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5513430237770081},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5058955550193787},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.48249220848083496},{"id":"https://openalex.org/keywords/surface-reconstruction","display_name":"Surface reconstruction","score":0.43024858832359314},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.42475125193595886},{"id":"https://openalex.org/keywords/surface","display_name":"Surface (topology)","score":0.3027920126914978},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.1773054599761963},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.17444241046905518},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1553051471710205},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.10664913058280945},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10538133978843689}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8726702928543091},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6773385405540466},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.6740288734436035},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.664914608001709},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.5754181742668152},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5513430237770081},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5058955550193787},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.48249220848083496},{"id":"https://openalex.org/C20885615","wikidata":"https://www.wikidata.org/wiki/Q825595","display_name":"Surface reconstruction","level":3,"score":0.43024858832359314},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.42475125193595886},{"id":"https://openalex.org/C2776799497","wikidata":"https://www.wikidata.org/wiki/Q484298","display_name":"Surface (topology)","level":2,"score":0.3027920126914978},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.1773054599761963},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.17444241046905518},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1553051471710205},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.10664913058280945},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10538133978843689},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2216604","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2216604","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:27127332","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27127332","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4845967","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4845967","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4845967","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4845967","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1513233548","https://openalex.org/W1970928383","https://openalex.org/W2000439270","https://openalex.org/W2004293194","https://openalex.org/W2018662705","https://openalex.org/W2078237160","https://openalex.org/W2085091083","https://openalex.org/W2086456561","https://openalex.org/W2101135654","https://openalex.org/W2114484921","https://openalex.org/W2121369614","https://openalex.org/W2121746937","https://openalex.org/W2138575170","https://openalex.org/W2139383790","https://openalex.org/W2140854449","https://openalex.org/W2148347694","https://openalex.org/W2151130155","https://openalex.org/W2151721316","https://openalex.org/W2544894372","https://openalex.org/W4254204731","https://openalex.org/W4300869678","https://openalex.org/W6630754573","https://openalex.org/W6634052527","https://openalex.org/W6676028428","https://openalex.org/W6729088671"],"related_works":["https://openalex.org/W3214912135","https://openalex.org/W2951635595","https://openalex.org/W4387252449","https://openalex.org/W4319337879","https://openalex.org/W2012519212","https://openalex.org/W4249039539","https://openalex.org/W1523541591","https://openalex.org/W2592984741","https://openalex.org/W1967068856","https://openalex.org/W1592689442"],"abstract_inverted_index":{"Whole":[0],"brain":[1,45,97,226],"segmentation":[2,85,105,127,158,227],"(with":[3],"comprehensive":[4],"cortical":[5,10,39,54,60,100,108,136,183,229],"and":[6,9,35,47,53,57,99,128,134,205,228],"subcortical":[7,52],"labels)":[8],"surface":[11,61,67,137,234],"reconstruction":[12,109,230],"are":[13,25,168,215],"two":[14,23],"essential":[15],"techniques":[16],"for":[17,217],"investigating":[18],"the":[19,51,59,107,117,122,187,206],"human":[20],"brain.":[21],"The":[22],"tasks":[24],"typically":[26],"conducted":[27],"independently,":[28],"however,":[29],"which":[30,93],"leads":[31],"to":[32,66,68,86,173,240],"spatial":[33],"inconsistencies":[34],"hinders":[36],"further":[37],"integrated":[38],"analyses.":[40],"To":[41,112],"obtain":[42],"self-consistent":[43,95,224],"whole":[44,96,225],"segmentations":[46,55,98,172],"surfaces,":[48],"FreeSurfer":[49,241],"segregates":[50],"before":[56,159],"after":[58],"reconstruction.":[62,138],"However,":[63],"this":[64,78,115],"\"segmentation":[65],"parcellation\"":[69],"strategy":[70],"has":[71,144],"shown":[72],"limitations":[73],"in":[74],"various":[75],"situations.":[76],"In":[77],"work,":[79],"we":[80],"propose":[81],"a":[82,155],"novel":[83],"\"multi-atlas":[84],"surface\"":[87],"method":[88,110],"called":[89],"Multi-atlas":[90],"CRUISE":[91],"(MaCRUISE),":[92],"achieves":[94,121,223],"surfaces":[101,184],"by":[102,185],"combining":[103],"multi-atlas":[104,126,157,171,191],"with":[106,132,140,170,201,220],"CRUISE.":[111],"our":[113],"knowledge,":[114],"is":[116,237],"first":[118],"work":[119],"that":[120],"reliability":[123],"of":[124,198,209],"state-of-the-art":[125],"labeling":[129],"methods":[130],"together":[131],"accurate":[133,239],"consistent":[135,162,182],"Compared":[139,219],"previous":[141],"methods,":[142],"MaCRUISE":[143,148,179,222,236],"three":[145],"features:":[146],"(1)":[147],"obtains":[149],"132":[150],"cortical/subcortical":[151],"labels":[152],"simultaneously":[153],"from":[154,190,212],"single":[156],"reconstructing":[160],"volume":[161,176],"surfaces;":[163],"(2)":[164],"Fuzzy":[165],"tissue":[166],"memberships":[167],"combined":[169],"address":[174],"partial":[175],"effects;":[177],"(3)":[178],"reconstructs":[180],"topologically":[181],"using":[186],"sulci":[188],"locations":[189],"segmentation.":[192],"Two":[193],"data":[194],"sets,":[195],"one":[196],"consisting":[197,208],"five":[199],"subjects":[200,214],"expertly":[202],"traced":[203],"landmarks":[204],"other":[207],"100":[210],"volumes":[211],"elderly":[213,248],"used":[216],"validation.":[218],"CRUISE,":[221],"without":[231],"compromising":[232],"on":[233],"accuracy.":[235],"comparably":[238],"while":[242],"achieving":[243],"greater":[244],"robustness":[245],"across":[246],"an":[247],"population.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
