{"id":"https://openalex.org/W2302992018","doi":"https://doi.org/10.1117/12.2216420","title":"Enhanced cortical thickness measurements for rodent brains via Lagrangian-based RK4 streamline computation","display_name":"Enhanced cortical thickness measurements for rodent brains via Lagrangian-based RK4 streamline computation","publication_year":2016,"publication_date":"2016-03-21","ids":{"openalex":"https://openalex.org/W2302992018","doi":"https://doi.org/10.1117/12.2216420","mag":"2302992018","pmid":"https://pubmed.ncbi.nlm.nih.gov/27065047"},"language":"en","primary_location":{"id":"doi:10.1117/12.2216420","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2216420","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014904502","display_name":"Joohwi Lee","orcid":"https://orcid.org/0000-0002-4263-471X"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joohwi Lee","raw_affiliation_strings":["The Univ. of North Carolina at Chapel Hill (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103213146","display_name":"Sun Hyung Kim","orcid":"https://orcid.org/0000-0003-4007-9385"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sun Hyung Kim","raw_affiliation_strings":["The Univ. of North Carolina at Chapel Hill (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020532873","display_name":"\u0130pek O\u011fuz","orcid":"https://orcid.org/0000-0002-1403-2420"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ipek Oguz","raw_affiliation_strings":["The Univ. of Iowa (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Univ. of Iowa (United States)","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065838160","display_name":"Martin Styner","orcid":"https://orcid.org/0000-0002-8747-5118"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Styner","raw_affiliation_strings":["The Univ. of North Carolina at Chapel Hill (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Univ. of North Carolina at Chapel Hill (United States)","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"9784","issue":null,"first_page":"97840B","last_page":"97840B"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.9269000291824341,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6664736270904541},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6024118065834045},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5744052529335022},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.4863053262233734},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.4311376214027405},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36631453037261963},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3561800420284271}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6664736270904541},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6024118065834045},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5744052529335022},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.4863053262233734},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.4311376214027405},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36631453037261963},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3561800420284271},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2216420","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2216420","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:27065047","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27065047","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:europepmc.org:3795169","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4825173","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5899999737739563}],"awards":[{"id":"https://openalex.org/G1989292043","display_name":null,"funder_award_id":"U54 HD079124","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G5018485956","display_name":null,"funder_award_id":"R01 MH091645","funder_id":"https://openalex.org/F4320337346","funder_display_name":"National Institute of Mental Health"},{"id":"https://openalex.org/G8243280623","display_name":null,"funder_award_id":"U24 AA020022","funder_id":"https://openalex.org/F4320337330","funder_display_name":"National Institute on Alcohol Abuse and Alcoholism"},{"id":"https://openalex.org/G8733526040","display_name":null,"funder_award_id":"P01 DA022446","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"}],"funders":[{"id":"https://openalex.org/F4320337330","display_name":"National Institute on Alcohol Abuse and Alcoholism","ror":"https://ror.org/02jzrsm59"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1251994293","https://openalex.org/W1557102217","https://openalex.org/W1574674419","https://openalex.org/W1826158161","https://openalex.org/W1964409205","https://openalex.org/W2004421347","https://openalex.org/W2008013874","https://openalex.org/W2015852090","https://openalex.org/W2022628207","https://openalex.org/W2027326032","https://openalex.org/W2039600900","https://openalex.org/W2064327730","https://openalex.org/W2064358322","https://openalex.org/W2093471907","https://openalex.org/W2097109632","https://openalex.org/W2105169845","https://openalex.org/W2107165478","https://openalex.org/W2110208125","https://openalex.org/W2114321577","https://openalex.org/W2130448147","https://openalex.org/W2131339155","https://openalex.org/W2138728868","https://openalex.org/W4232205781","https://openalex.org/W4256188663","https://openalex.org/W4319292979","https://openalex.org/W6628200253","https://openalex.org/W6634621272","https://openalex.org/W6638740917","https://openalex.org/W6673724357","https://openalex.org/W6676753409","https://openalex.org/W6677299107","https://openalex.org/W6679481774"],"related_works":["https://openalex.org/W3027020613","https://openalex.org/W2016533837","https://openalex.org/W2051487156","https://openalex.org/W3167885074","https://openalex.org/W2892386716","https://openalex.org/W1998563493","https://openalex.org/W4306164210","https://openalex.org/W4313316311","https://openalex.org/W4362608745","https://openalex.org/W2073681303"],"abstract_inverted_index":{"The":[0,200],"cortical":[1,39,60,86,98,206,221],"thickness":[2,40,61,87,99,117,143,151,207,222],"of":[3,103,141,168],"the":[4,20,116,128,142,148,150,166,204,219],"mammalian":[5],"brain":[6,51,92,192],"is":[7,152,188],"an":[8,96,169,180],"important":[9],"morphological":[10],"characteristic":[11],"that":[12,24,46,187,203,214],"can":[13,146,209],"be":[14,26],"used":[15],"to":[16,122,190],"investigate":[17],"and":[18,52,73,105,154],"observe":[19],"brain\u2019s":[21],"developmental":[22],"changes":[23],"might":[25],"caused":[27],"by":[28,133,158],"biologically":[29],"toxic":[30],"substances":[31],"such":[32],"as":[33,71,75],"ethanol":[34],"or":[35],"cocaine.":[36],"Although":[37],"various":[38],"analysis":[41,62,223],"methods":[42,63],"have":[43,53,67],"been":[44],"proposed":[45,85,205],"are":[47,215],"applicable":[48],"for":[49,64,78,90,138],"human":[50,79],"developed":[54],"into":[55],"well-validated":[56],"open-source":[57],"software":[58],"packages,":[59],"rodent":[65,91,191],"brains":[66],"not":[68,196,216],"yet":[69],"become":[70],"robust":[72],"accurate":[74],"those":[76],"designed":[77],"brains.":[80],"Based":[81],"on":[82,165],"a":[83,111,135],"previously":[84],"measurement":[88,118],"pipeline":[89,100,208],"analysis,1":[93],"we":[94,109,145,178],"present":[95],"enhanced":[97],"in":[101,115,120,218],"terms":[102],"accuracy":[104,157],"anatomical":[106],"consistency.":[107],"First,":[108],"propose":[110,179],"Lagrangian-based":[112],"computational":[113],"approach":[114],"step":[119],"order":[121],"minimize":[123],"local":[124],"truncation":[125],"error":[126],"using":[127],"fourth-order":[129],"Runge-Kutta":[130],"method.":[131],"Second,":[132],"constructing":[134],"line":[136],"object":[137],"each":[139],"streamline":[140],"measurement,":[144],"visualize":[147],"way":[149],"measured":[153],"achieve":[155],"sub-voxel":[156],"performing":[159],"geometric":[160],"post-processing.":[161],"Last,":[162],"with":[163],"emphasis":[164],"importance":[167],"anatomically":[170],"consistent":[171],"partial":[172],"differential":[173],"equation":[174],"(PDE)":[175],"boundary":[176,183],"map,":[177],"automatic":[181],"PDE":[182],"map":[184],"generation":[185],"algorithm":[186],"specific":[189],"anatomy,":[193],"which":[194],"does":[195],"require":[197],"manual":[198],"labeling.":[199],"results":[201],"show":[202],"produce":[210],"statistically":[211],"significant":[212],"regions":[213],"observed":[217],"previous":[220],"pipeline.":[224]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
