{"id":"https://openalex.org/W2317448092","doi":"https://doi.org/10.1117/12.2214676","title":"Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes","display_name":"Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes","publication_year":2016,"publication_date":"2016-03-21","ids":{"openalex":"https://openalex.org/W2317448092","doi":"https://doi.org/10.1117/12.2214676","mag":"2317448092","pmid":"https://pubmed.ncbi.nlm.nih.gov/27199502"},"language":"en","primary_location":{"id":"doi:10.1117/12.2214676","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2214676","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4869874","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069611592","display_name":"Bhavna Antony","orcid":"https://orcid.org/0000-0002-6882-2444"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bhavna J. Antony","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103480360","display_name":"Andrew Lang","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Lang","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061875360","display_name":"Emily K. Swingle","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emily K. Swingle","raw_affiliation_strings":["The Ohio State Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State Univ. (United States)","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023759929","display_name":"Omar Al\u2010Louzi","orcid":"https://orcid.org/0000-0003-2260-5660"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Omar Al-Louzi","raw_affiliation_strings":["Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075622613","display_name":"Aaron Carass","orcid":"https://orcid.org/0000-0003-4939-5085"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Carass","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065248584","display_name":"Sharon D. Solomon","orcid":null},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharon Solomon","raw_affiliation_strings":["Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061851273","display_name":"Peter A. Calabresi","orcid":"https://orcid.org/0000-0002-7776-6472"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter A. Calabresi","raw_affiliation_strings":["Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052025260","display_name":"Shiv Saidha","orcid":"https://orcid.org/0000-0001-6387-0714"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]},{"id":"https://openalex.org/I2799853436","display_name":"Johns Hopkins Medicine","ror":"https://ror.org/037zgn354","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799853436"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiv Saidha","raw_affiliation_strings":["Johns Hopkins Univ. School of Medicine (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. School of Medicine (United States)","institution_ids":["https://openalex.org/I145311948","https://openalex.org/I2799853436"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066682675","display_name":"Jerry L. Prince","orcid":"https://orcid.org/0000-0002-6553-0876"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jerry L. Prince","raw_affiliation_strings":["Johns Hopkins Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johns Hopkins Univ. (United States)","institution_ids":["https://openalex.org/I145311948"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":22.4545,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.9978903,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9784","issue":null,"first_page":"97841C","last_page":"97841C"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10250","display_name":"Glaucoma and retinal disorders","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10250","display_name":"Glaucoma and retinal disorders","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11569","display_name":"Optical Coherence Tomography Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/optical-coherence-tomography","display_name":"Optical coherence tomography","score":0.8172507882118225},{"id":"https://openalex.org/keywords/retinal","display_name":"Retinal","score":0.7328227162361145},{"id":"https://openalex.org/keywords/retina","display_name":"Retina","score":0.7219486236572266},{"id":"https://openalex.org/keywords/nerve-fiber-layer","display_name":"Nerve fiber layer","score":0.5999326705932617},{"id":"https://openalex.org/keywords/macular-edema","display_name":"Macular edema","score":0.5185794830322266},{"id":"https://openalex.org/keywords/ophthalmology","display_name":"Ophthalmology","score":0.4886944591999054},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4707264006137848},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4635201394557953},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3137691617012024},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3057635426521301},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.1490730345249176},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14131656289100647}],"concepts":[{"id":"https://openalex.org/C2778818243","wikidata":"https://www.wikidata.org/wiki/Q899552","display_name":"Optical coherence tomography","level":2,"score":0.8172507882118225},{"id":"https://openalex.org/C2780827179","wikidata":"https://www.wikidata.org/wiki/Q422001","display_name":"Retinal","level":2,"score":0.7328227162361145},{"id":"https://openalex.org/C2777093970","wikidata":"https://www.wikidata.org/wiki/Q169342","display_name":"Retina","level":2,"score":0.7219486236572266},{"id":"https://openalex.org/C2780592520","wikidata":"https://www.wikidata.org/wiki/Q4423908","display_name":"Nerve fiber layer","level":3,"score":0.5999326705932617},{"id":"https://openalex.org/C2780347916","wikidata":"https://www.wikidata.org/wiki/Q1813737","display_name":"Macular edema","level":3,"score":0.5185794830322266},{"id":"https://openalex.org/C118487528","wikidata":"https://www.wikidata.org/wiki/Q161437","display_name":"Ophthalmology","level":1,"score":0.4886944591999054},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4707264006137848},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4635201394557953},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3137691617012024},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3057635426521301},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.1490730345249176},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14131656289100647}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2214676","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2214676","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:27199502","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27199502","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4869874","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4869874","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4869874","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4869874","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3070687341","display_name":null,"funder_award_id":"R01-EY024655","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"},{"id":"https://openalex.org/G450072087","display_name":null,"funder_award_id":"R01 NS082347","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G5309777294","display_name":null,"funder_award_id":"R21 EY022150","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"}],"funders":[{"id":"https://openalex.org/F4320337350","display_name":"National Eye Institute","ror":"https://ror.org/03wkg3b53"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1438536501","https://openalex.org/W1549946184","https://openalex.org/W1565046859","https://openalex.org/W1585450072","https://openalex.org/W1706425813","https://openalex.org/W1970663794","https://openalex.org/W1979102712","https://openalex.org/W1984658391","https://openalex.org/W1993893886","https://openalex.org/W1996991192","https://openalex.org/W2000511084","https://openalex.org/W2038850290","https://openalex.org/W2044375609","https://openalex.org/W2054946972","https://openalex.org/W2083609416","https://openalex.org/W2106255562","https://openalex.org/W2110593503","https://openalex.org/W2127294620","https://openalex.org/W2127318120","https://openalex.org/W2143516773","https://openalex.org/W2146112699","https://openalex.org/W2164774194","https://openalex.org/W2313336038","https://openalex.org/W2418802570","https://openalex.org/W2911964244","https://openalex.org/W6628521338","https://openalex.org/W6633064582","https://openalex.org/W6633941272","https://openalex.org/W6635116231","https://openalex.org/W6646445755","https://openalex.org/W6648592703","https://openalex.org/W6649394234","https://openalex.org/W6671080933","https://openalex.org/W6676052524","https://openalex.org/W6676412751"],"related_works":["https://openalex.org/W2002084356","https://openalex.org/W2507425325","https://openalex.org/W2008121457","https://openalex.org/W4300494720","https://openalex.org/W3135186456","https://openalex.org/W2028110752","https://openalex.org/W2490628713","https://openalex.org/W2583809017","https://openalex.org/W952770473","https://openalex.org/W934474361"],"abstract_inverted_index":{"Optical":[0],"coherence":[1],"tomography":[2],"(OCT)":[3],"is":[4,131],"a":[5,23,128],"noninvasive":[6],"imaging":[7,18],"modality":[8],"that":[9,144],"has":[10,95],"begun":[11],"to":[12,30,67,98,191],"find":[13],"widespread":[14],"use":[15],"in":[16,33,83,153],"retinal":[17,38,113,148],"for":[19,56,109],"the":[20,34,46,51,58,70,84,110,126,147,151,176,186],"detection":[21,188],"of":[22,25,36,48,72,86,89,112,125,162,185],"variety":[24],"ocular":[26],"diseases.":[27],"In":[28,53,133],"addition":[29],"structural":[31],"changes":[32],"form":[35],"altered":[37],"layer":[39],"thicknesses,":[40],"pathological":[41],"conditions":[42],"may":[43],"also":[44,80],"cause":[45],"formation":[47,71],"edema":[49,77],"within":[50,122],"retina.":[52],"multiple":[54],"sclerosis,":[55],"instance,":[57],"nerve":[59],"fiber":[60],"and":[61,92,115,150,169,175,183,194],"ganglion":[62],"cell":[63],"layers":[64,114,149],"are":[65],"known":[66,167],"thin.":[68],"Additionally,":[69],"pseudocysts":[73,177],"called":[74],"microcystic":[75],"macular":[76],"(MME)":[78],"have":[79],"been":[81,96],"observed":[82],"eyes":[85],"about":[87],"5%":[88],"MS":[90,164],"patients,":[91],"its":[93],"presence":[94],"shown":[97],"be":[99,192],"correlated":[100],"with":[101,166],"disease":[102],"severity.":[103],"Previously,":[104],"we":[105,136],"proposed":[106],"separate":[107],"algorithms":[108],"segmentation":[111],"MME,":[116],"but":[117],"since":[118],"MME":[119,152,168],"mainly":[120],"occurs":[121],"specific":[123],"regions":[124],"retina,":[127],"simultaneous":[129],"approach":[130,143],"advantageous.":[132],"this":[134],"work,":[135],"propose":[137],"an":[138],"automated":[139],"globally":[140],"optimal":[141],"graph-theoretic":[142],"simultaneously":[145],"segments":[146],"volumetric":[154],"OCT":[155],"scans.":[156],"SD-OCT":[157],"scans":[158],"from":[159],"one":[160],"eye":[161],"12":[163],"patients":[165],"8":[170],"healthy":[171],"controls":[172],"were":[173],"acquired":[174],"manually":[178],"traced.":[179],"The":[180],"overall":[181],"precision":[182],"recall":[184],"pseudocyst":[187],"was":[189],"found":[190],"86.0%":[193],"79.5%,":[195],"respectively.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
