{"id":"https://openalex.org/W2600729337","doi":"https://doi.org/10.1117/12.2211368","title":"Automated tubule nuclei quantification and correlation with oncotype DX risk categories in ER+ breast cancer whole slide images","display_name":"Automated tubule nuclei quantification and correlation with oncotype DX risk categories in ER+ breast cancer whole slide images","publication_year":2016,"publication_date":"2016-03-23","ids":{"openalex":"https://openalex.org/W2600729337","doi":"https://doi.org/10.1117/12.2211368","mag":"2600729337"},"language":"en","primary_location":{"id":"doi:10.1117/12.2211368","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2211368","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016468813","display_name":"David Romo\u2010Bucheli","orcid":"https://orcid.org/0000-0003-1893-6854"},"institutions":[{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]}],"countries":["CO"],"is_corresponding":true,"raw_author_name":"David Romo-Bucheli","raw_affiliation_strings":["Univ. Nacional de Colombia (Colombia)"],"affiliations":[{"raw_affiliation_string":"Univ. Nacional de Colombia (Colombia)","institution_ids":["https://openalex.org/I36243813"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073713636","display_name":"Andrew Janowczyk","orcid":"https://orcid.org/0000-0003-2982-4321"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Janowczyk","raw_affiliation_strings":["Case Western Reserve Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102790773","display_name":"Eduardo Romero","orcid":"https://orcid.org/0000-0003-2088-2509"},"institutions":[{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Eduardo Romero","raw_affiliation_strings":["Univ. Nacional de Colombia (Colombia)"],"affiliations":[{"raw_affiliation_string":"Univ. Nacional de Colombia (Colombia)","institution_ids":["https://openalex.org/I36243813"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111792123","display_name":"Hannah Gilmore","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108791","display_name":"University Hospitals Case Medical Center","ror":"https://ror.org/01gc0wp38","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799343972","https://openalex.org/I4210108791"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hannah Gilmore","raw_affiliation_strings":["Univ. Hospitals Case Medical Ctr. (United States)"],"affiliations":[{"raw_affiliation_string":"Univ. Hospitals Case Medical Ctr. (United States)","institution_ids":["https://openalex.org/I4210108791"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027642699","display_name":"Anant Madabhushi","orcid":"https://orcid.org/0000-0002-5741-0399"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anant Madabhushi","raw_affiliation_strings":["Case Western Reserve Univ. (United States)"],"affiliations":[{"raw_affiliation_string":"Case Western Reserve Univ. (United States)","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5016468813"],"corresponding_institution_ids":["https://openalex.org/I36243813"],"apc_list":null,"apc_paid":null,"fwci":1.2854,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.87972408,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"9791","issue":null,"first_page":"979106","last_page":"979106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10183","display_name":"Breast Cancer Treatment Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.7120546698570251},{"id":"https://openalex.org/keywords/hormonal-therapy","display_name":"Hormonal therapy","score":0.560283899307251},{"id":"https://openalex.org/keywords/grading","display_name":"Grading (engineering)","score":0.5270906686782837},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5176437497138977},{"id":"https://openalex.org/keywords/estrogen-receptor","display_name":"Estrogen receptor","score":0.5060316920280457},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.5010709762573242},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.4688452482223511},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4479762613773346},{"id":"https://openalex.org/keywords/chemotherapy","display_name":"Chemotherapy","score":0.4262887239456177},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1722303032875061}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.7120546698570251},{"id":"https://openalex.org/C2778311097","wikidata":"https://www.wikidata.org/wiki/Q5903784","display_name":"Hormonal therapy","level":4,"score":0.560283899307251},{"id":"https://openalex.org/C2777286243","wikidata":"https://www.wikidata.org/wiki/Q5591926","display_name":"Grading (engineering)","level":2,"score":0.5270906686782837},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5176437497138977},{"id":"https://openalex.org/C84606932","wikidata":"https://www.wikidata.org/wiki/Q416496","display_name":"Estrogen receptor","level":4,"score":0.5060316920280457},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.5010709762573242},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.4688452482223511},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4479762613773346},{"id":"https://openalex.org/C2776694085","wikidata":"https://www.wikidata.org/wiki/Q974135","display_name":"Chemotherapy","level":2,"score":0.4262887239456177},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1722303032875061},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2211368","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2211368","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8399999737739563,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320309681","display_name":"Cleveland Clinic Foundation","ror":"https://ror.org/03xjacd83"},{"id":"https://openalex.org/F4320310281","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666"},{"id":"https://openalex.org/F4320310595","display_name":"Case Comprehensive Cancer Center, Case Western Reserve University","ror":"https://ror.org/051fd9666"},{"id":"https://openalex.org/F4320321458","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W46659105","https://openalex.org/W1977442670","https://openalex.org/W2029972721","https://openalex.org/W2042840790","https://openalex.org/W2053741141","https://openalex.org/W2062177968","https://openalex.org/W2083494597","https://openalex.org/W2101519511","https://openalex.org/W2104256360","https://openalex.org/W2133059825","https://openalex.org/W2133605685","https://openalex.org/W2151211318","https://openalex.org/W2151608510","https://openalex.org/W2162548780","https://openalex.org/W2163605009","https://openalex.org/W2189916683","https://openalex.org/W2329715292","https://openalex.org/W2491410854","https://openalex.org/W4205098750","https://openalex.org/W6602002561","https://openalex.org/W6644742310","https://openalex.org/W6666332967","https://openalex.org/W6675264194","https://openalex.org/W6675742875","https://openalex.org/W6679777867","https://openalex.org/W6684191040"],"related_works":["https://openalex.org/W2388730008","https://openalex.org/W2367105124","https://openalex.org/W2791179561","https://openalex.org/W2379151083","https://openalex.org/W2348231456","https://openalex.org/W2354050160","https://openalex.org/W2368979736","https://openalex.org/W2369039771","https://openalex.org/W2348152691","https://openalex.org/W2357456301"],"abstract_inverted_index":{"Early":[0],"stage":[1,30],"estrogen":[2],"receptor":[3],"positive":[4],"(ER+)":[5],"breast":[6,121],"cancer":[7,19,122],"(BCa)":[8],"treatment":[9,25],"is":[10,33,162],"based":[11],"on":[12],"the":[13,59,78,87,115,135,156,163,194,198,211,219,239,252,255,292,320,332,367,370,377,409],"presumed":[14],"aggressiveness":[15],"and":[16,26,44,69,107,242,247,296,316,340,350,386],"likelihood":[17],"of":[18,28,36,111,155,165,169,191,200,206,218,230,264,294,369,398,411],"recurrence.":[20],"The":[21,167,216,289,304,347],"primary":[22],"conundrum":[23],"in":[24,124,159,261],"management":[27],"early":[29],"ER+":[31,81,192],"BCa":[32,82,309,333,371,378,412],"identifying":[34],"which":[35,45,401],"these":[37,97,125],"cancers":[38,90],"are":[39],"candidates":[40],"for":[41,76,114,301,308,331,408],"adjuvant":[42,64,84],"chemotherapy":[43,85],"patients":[46,58],"will":[47],"respond":[48],"to":[49,102,117,130,173,181,203,395],"hormonal":[50,93],"therapy":[51,94],"alone.":[52,95],"This":[53],"decision":[54],"could":[55],"spare":[56],"some":[57],"inherent":[60],"toxicity":[61],"associated":[62],"with":[63,134,210,227,254,311,335,366],"chemotherapy.":[65],"Oncotype":[66],"DX":[67],"(ODX)":[68],"other":[70],"gene":[71,98],"expression":[72,99],"tests":[73,100],"have":[74,141],"allowed":[75],"distinguishing":[77],"more":[79],"aggressive":[80,89],"requiring":[83],"from":[86,92,186,270,274],"less":[88],"benefiting":[91],"However":[96],"tend":[101],"be":[103,118,131,151],"expensive,":[104],"tissue":[105,112],"destructive":[106],"require":[108],"physical":[109],"shipping":[110],"blocks":[113],"test":[116],"done.":[119],"Interestingly":[120],"grade":[123,146,343,353,389],"tumors":[126],"has":[127],"been":[128],"shown":[129,142],"highly":[132,152],"correlated":[133],"ODX":[136,213,256,314,338,349,385],"risk":[137,214,257],"score.":[138],"Unfortunately":[139],"studies":[140],"that":[143,197,307,329,380,406],"Bloom-Richardson":[144],"(BR)":[145],"determined":[147],"by":[148],"pathologists":[149],"can":[150],"variable.":[153],"One":[154],"constituent":[157],"categories":[158],"BR":[160,318,342,352,388],"grading":[161],"quantification":[164],"tubules.":[166],"goal":[168],"this":[170],"study":[171,286],"was":[172,225,259,299,325,402],"develop":[174],"a":[175,228,236,262,275,357,383,391],"deep":[176,222],"learning":[177,223],"neural":[178],"network":[179],"classifier":[180],"automatically":[182],"identify":[183],"tubule":[184,201,220,295,322,361,393],"nuclei":[185,202,207,221,298,323,362,394,399],"whole":[187],"slide":[188],"images":[189],"(WSI)":[190],"BCa,":[193],"hypothesis":[195],"being":[196],"ratio":[199,290,324,363,400],"overall":[204],"number":[205,293,397],"would":[208],"correlate":[209],"corresponding":[212],"categories.":[215],"performance":[217],"strategy":[224],"evaluated":[226],"set":[229,263],"61":[231],"high":[232,266,281,337,341,384,387],"power":[233,267,282],"fields.":[234],"Under":[235],"5-fold":[237],"cross-validation,":[238],"average":[240,360],"precision":[241],"recall":[243],"measures":[244],"were":[245,287],"0:72":[246],"0:56":[248],"respectively.":[249],"In":[250],"addition,":[251],"correlation":[253],"score":[258,315,339],"assessed":[260],"7513":[265],"fields":[268,283],"extracted":[269],"174":[271],"WSI,":[272],"each":[273,302],"different":[276],"patient":[277,285],"(At":[278],"most":[279],"50":[280],"per":[284],"used).":[288],"between":[291],"non-tubule":[297],"computed":[300],"WSI.":[303],"results":[305],"suggests":[306],"cases":[310,334,354,372,379,413],"both":[312,336,382],"low":[313,317,348,351],"grade,":[319],"mean":[321,392],"significantly":[326,358,403],"higher":[327,359],"than":[328,405],"obtained":[330,407],"(<i>p</i>":[344,414],"&lt;":[345,374,415],"0:01).":[346,416],"also":[355],"presented":[356,381],"when":[364],"compared":[365],"rest":[368,410],"(p":[373],"0:05).":[375],"Finally,":[376],"show":[390],"total":[396],"smaller":[404]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
