{"id":"https://openalex.org/W762188440","doi":"https://doi.org/10.1117/12.2197221","title":"Identification of column edges of DNA fragments by using K-means clustering and mean algorithm on lane histograms of DNA agarose gel electrophoresis images","display_name":"Identification of column edges of DNA fragments by using K-means clustering and mean algorithm on lane histograms of DNA agarose gel electrophoresis images","publication_year":2015,"publication_date":"2015-07-01","ids":{"openalex":"https://openalex.org/W762188440","doi":"https://doi.org/10.1117/12.2197221","mag":"762188440"},"language":"en","primary_location":{"id":"doi:10.1117/12.2197221","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2197221","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036864780","display_name":"Muhammed Kamil Turan","orcid":"https://orcid.org/0000-0002-1086-9514"},"institutions":[{"id":"https://openalex.org/I173761726","display_name":"Karab\u00fck University","ror":"https://ror.org/04wy7gp54","country_code":"TR","type":"education","lineage":["https://openalex.org/I173761726"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Muhammed K. Turan","raw_affiliation_strings":["Karabuk Univ. (Turkey)","Karabuk University,  Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karabuk Univ. (Turkey)","institution_ids":["https://openalex.org/I173761726"]},{"raw_affiliation_string":"Karabuk University,  Turkey","institution_ids":["https://openalex.org/I173761726"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047249485","display_name":"Eft\u00e2l \u015eehirli","orcid":"https://orcid.org/0000-0003-0511-1933"},"institutions":[{"id":"https://openalex.org/I173761726","display_name":"Karab\u00fck University","ror":"https://ror.org/04wy7gp54","country_code":"TR","type":"education","lineage":["https://openalex.org/I173761726"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Eftal Sehirli","raw_affiliation_strings":["Karabuk Univ. (Turkey)","Karabuk University,  Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karabuk Univ. (Turkey)","institution_ids":["https://openalex.org/I173761726"]},{"raw_affiliation_string":"Karabuk University,  Turkey","institution_ids":["https://openalex.org/I173761726"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067708193","display_name":"Abdullah Elen","orcid":"https://orcid.org/0000-0003-1644-0476"},"institutions":[{"id":"https://openalex.org/I173761726","display_name":"Karab\u00fck University","ror":"https://ror.org/04wy7gp54","country_code":"TR","type":"education","lineage":["https://openalex.org/I173761726"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Abdullah Elen","raw_affiliation_strings":["Karabuk Univ. (Turkey)","Karabuk University,  Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karabuk Univ. (Turkey)","institution_ids":["https://openalex.org/I173761726"]},{"raw_affiliation_string":"Karabuk University,  Turkey","institution_ids":["https://openalex.org/I173761726"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014025225","display_name":"\u0130smail Rak\u0131p Kara\u015f","orcid":"https://orcid.org/0000-0001-5934-3161"},"institutions":[{"id":"https://openalex.org/I173761726","display_name":"Karab\u00fck University","ror":"https://ror.org/04wy7gp54","country_code":"TR","type":"education","lineage":["https://openalex.org/I173761726"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ismail R. Karas","raw_affiliation_strings":["Karabuk Univ. (Turkey)","Karabuk University,  Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karabuk Univ. (Turkey)","institution_ids":["https://openalex.org/I173761726"]},{"raw_affiliation_string":"Karabuk University,  Turkey","institution_ids":["https://openalex.org/I173761726"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I173761726"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.0094364,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"9631","issue":null,"first_page":"963110","last_page":"963110"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9332000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/histogram","display_name":"Histogram","score":0.6853228807449341},{"id":"https://openalex.org/keywords/agarose","display_name":"Agarose","score":0.6509140133857727},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5770640969276428},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5756791234016418},{"id":"https://openalex.org/keywords/agarose-gel-electrophoresis","display_name":"Agarose gel electrophoresis","score":0.5225274562835693},{"id":"https://openalex.org/keywords/gel-electrophoresis-of-nucleic-acids","display_name":"Gel electrophoresis of nucleic acids","score":0.5010192394256592},{"id":"https://openalex.org/keywords/gel-electrophoresis","display_name":"Gel electrophoresis","score":0.47456008195877075},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.452494353055954},{"id":"https://openalex.org/keywords/electrophoresis","display_name":"Electrophoresis","score":0.43119189143180847},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4145009517669678},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.41361987590789795},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27747660875320435},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.266980916261673},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24669548869132996},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.23019921779632568},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.2124384343624115},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.15747693181037903},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13365861773490906}],"concepts":[{"id":"https://openalex.org/C53533937","wikidata":"https://www.wikidata.org/wiki/Q185020","display_name":"Histogram","level":3,"score":0.6853228807449341},{"id":"https://openalex.org/C2778476535","wikidata":"https://www.wikidata.org/wiki/Q390697","display_name":"Agarose","level":2,"score":0.6509140133857727},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5770640969276428},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5756791234016418},{"id":"https://openalex.org/C2778271344","wikidata":"https://www.wikidata.org/wiki/Q903395","display_name":"Agarose gel electrophoresis","level":3,"score":0.5225274562835693},{"id":"https://openalex.org/C190911170","wikidata":"https://www.wikidata.org/wiki/Q4531118","display_name":"Gel electrophoresis of nucleic acids","level":3,"score":0.5010192394256592},{"id":"https://openalex.org/C116084860","wikidata":"https://www.wikidata.org/wiki/Q48255","display_name":"Gel electrophoresis","level":2,"score":0.47456008195877075},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.452494353055954},{"id":"https://openalex.org/C40250595","wikidata":"https://www.wikidata.org/wiki/Q185098","display_name":"Electrophoresis","level":2,"score":0.43119189143180847},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4145009517669678},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.41361987590789795},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27747660875320435},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.266980916261673},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24669548869132996},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.23019921779632568},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.2124384343624115},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.15747693181037903},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13365861773490906}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2197221","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2197221","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"},{"id":"https://openalex.org/F4320326538","display_name":"Karab\u00fck \u00dcniversitesi","ror":"https://ror.org/04wy7gp54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W2017146617","https://openalex.org/W2078495025","https://openalex.org/W2136418717","https://openalex.org/W2153625822","https://openalex.org/W2171284890","https://openalex.org/W4382140653","https://openalex.org/W6682397907","https://openalex.org/W6684696810","https://openalex.org/W6854386098"],"related_works":["https://openalex.org/W3110803893","https://openalex.org/W4288450819","https://openalex.org/W4255589087","https://openalex.org/W2476713926","https://openalex.org/W2041044489","https://openalex.org/W4361867562","https://openalex.org/W2057092598","https://openalex.org/W2087171661","https://openalex.org/W2130313706","https://openalex.org/W2027179121"],"abstract_inverted_index":{"Gel":[0],"electrophoresis":[1,76],"(GE)":[2],"is":[3,40,120],"one":[4],"of":[5,44,58,73,97,117,149],"the":[6,65,68,85,112,134,145],"most":[7],"used":[8],"method":[9],"to":[10,17,36,41,93,129,143],"separate":[11,37,130],"DNA,":[12],"RNA,":[13],"protein":[14],"molecules":[15],"according":[16],"size,":[18],"weight":[19],"and":[20,108,126,152],"quantity":[21],"parameters":[22],"in":[23,61,136],"many":[24,154],"areas":[25],"such":[26,100],"as":[27,101],"genetics,":[28],"molecular":[29],"biology,":[30],"biochemistry,":[31],"microbiology.":[32],"The":[33],"main":[34],"way":[35],"each":[38,45],"molecule":[39,46],"find":[42],"borders":[43],"fragment.":[47],"This":[48],"paper":[49],"presents":[50,147],"a":[51,137,162],"software":[52],"application":[53,69,146],"that":[54],"show":[55],"columns":[56],"edges":[57,116],"DNA":[59,118,131,150,155],"fragments":[60,119,132,151,156],"3":[62],"steps.":[63],"In":[64,84,111,141],"first":[66],"step":[67],"obtains":[70],"lane":[71,98],"histograms":[72],"agarose":[74],"gel":[75],"images":[77,159],"by":[78,122,161],"doing":[79],"projection":[80],"based":[81],"on":[82,158],"x-axis.":[83],"second":[86],"step,":[87,114],"it":[88],"utilizes":[89],"k-means":[90],"clustering":[91],"algorithm":[92,125],"classify":[94],"point":[95],"values":[96,107],"histogram":[99],"left":[102],"side":[103,106],"values,":[104],"right":[105],"undesired":[109],"values.":[110],"third":[113],"column":[115],"shown":[121],"using":[123],"mean":[124],"mathematical":[127],"processes":[128],"from":[133],"background":[135],"fully":[138],"automated":[139],"way.":[140],"addition":[142],"this,":[144],"locations":[148],"how":[153],"exist":[157],"captured":[160],"scientific":[163],"camera.":[164]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
