{"id":"https://openalex.org/W2065139696","doi":"https://doi.org/10.1117/12.2086370","title":"OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale","display_name":"OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale","publication_year":2015,"publication_date":"2015-03-20","ids":{"openalex":"https://openalex.org/W2065139696","doi":"https://doi.org/10.1117/12.2086370","mag":"2065139696"},"language":"en","primary_location":{"id":"doi:10.1117/12.2086370","is_oa":true,"landing_page_url":"https://doi.org/10.1117/12.2086370","pdf_url":"https://www.spiedigitallibrary.org/conference-proceedings-of-spie/9413/941307/OMERO-and-Bio-Formats-5--flexible-access-to-large/10.1117/12.2086370.pdf","source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.spiedigitallibrary.org/conference-proceedings-of-spie/9413/941307/OMERO-and-Bio-Formats-5--flexible-access-to-large/10.1117/12.2086370.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091278117","display_name":"Josh Moore","orcid":"https://orcid.org/0000-0003-4028-811X"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Josh Moore","raw_affiliation_strings":["Glencoe Software, Inc. (United States)","Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Glencoe Software, Inc. (United States)","institution_ids":[]},{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003687873","display_name":"Melissa Linkert","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Melissa Linkert","raw_affiliation_strings":["Glencoe Software, Inc. (United States)"],"affiliations":[{"raw_affiliation_string":"Glencoe Software, Inc. (United States)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022866840","display_name":"Colin Blackburn","orcid":null},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Colin Blackburn","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052239899","display_name":"Mark Carroll","orcid":"https://orcid.org/0000-0001-7642-8749"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Carroll","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014123345","display_name":"Gus Ferguson","orcid":"https://orcid.org/0000-0003-1567-270X"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard K. Ferguson","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075641961","display_name":"Helen Flynn","orcid":"https://orcid.org/0000-0001-6393-8942"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Helen Flynn","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013577425","display_name":"Kenneth Gillen","orcid":"https://orcid.org/0000-0001-6104-6190"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kenneth Gillen","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076090795","display_name":"R. A. Leigh","orcid":"https://orcid.org/0000-0003-2004-6965"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Roger Leigh","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101405806","display_name":"Simon Li","orcid":"https://orcid.org/0000-0002-7929-2442"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Li","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038127431","display_name":"Dominik Lindner","orcid":"https://orcid.org/0000-0001-8038-1250"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dominik Lindner","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032873940","display_name":"William J. Moore","orcid":"https://orcid.org/0000-0002-7264-8338"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"William J. Moore","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017588468","display_name":"Andrew Patterson","orcid":"https://orcid.org/0000-0002-0017-2393"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew J. Patterson","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064450129","display_name":"Blazej Pindelski","orcid":null},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Blazej Pindelski","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109507739","display_name":"Balaji Ramalingam","orcid":null},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Balaji Ramalingam","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063574896","display_name":"Emil Rozbicki","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emil Rozbicki","raw_affiliation_strings":["Glencoe Software, Inc. (United States)"],"affiliations":[{"raw_affiliation_string":"Glencoe Software, Inc. (United States)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075154106","display_name":"Aleksandra Tarkowska","orcid":"https://orcid.org/0000-0002-3392-3691"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Aleksandra Tarkowska","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072188263","display_name":"Petr Walczysko","orcid":"https://orcid.org/0000-0003-0302-8247"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Petr Walczysko","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060509001","display_name":"Chris Allan","orcid":"https://orcid.org/0000-0002-8151-4059"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chris Allan","raw_affiliation_strings":["Glencoe Software, Inc (United States)"],"affiliations":[{"raw_affiliation_string":"Glencoe Software, Inc (United States)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076169286","display_name":"Jean\u2010Marie Burel","orcid":"https://orcid.org/0000-0002-1789-1861"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jean-Marie Burel","raw_affiliation_strings":["Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087159664","display_name":"Jason R. Swedlow","orcid":"https://orcid.org/0000-0002-2198-1958"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jason Swedlow","raw_affiliation_strings":["Glencoe Software, Inc. (United States)","Univ. of Dundee (United Kingdom)"],"affiliations":[{"raw_affiliation_string":"Glencoe Software, Inc. (United States)","institution_ids":[]},{"raw_affiliation_string":"Univ. of Dundee (United Kingdom)","institution_ids":["https://openalex.org/I177639307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":20,"corresponding_author_ids":["https://openalex.org/A5091278117"],"corresponding_institution_ids":["https://openalex.org/I177639307"],"apc_list":null,"apc_paid":null,"fwci":1.2437,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.863221,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"9413","issue":null,"first_page":"941307","last_page":"941307"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terabyte","display_name":"Terabyte","score":0.8959484100341797},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8732544183731079},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.6061494946479797},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5164434909820557},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.4866974651813507},{"id":"https://openalex.org/keywords/image-file-formats","display_name":"Image file formats","score":0.4729040861129761},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4691202938556671},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.43901559710502625},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43743598461151123},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.42422935366630554},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.260209321975708},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10877072811126709},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.10217171907424927}],"concepts":[{"id":"https://openalex.org/C199683683","wikidata":"https://www.wikidata.org/wiki/Q8799","display_name":"Terabyte","level":2,"score":0.8959484100341797},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8732544183731079},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.6061494946479797},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5164434909820557},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.4866974651813507},{"id":"https://openalex.org/C65377053","wikidata":"https://www.wikidata.org/wiki/Q1572121","display_name":"Image file formats","level":3,"score":0.4729040861129761},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4691202938556671},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.43901559710502625},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43743598461151123},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.42422935366630554},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.260209321975708},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10877072811126709},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.10217171907424927},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2086370","is_oa":true,"landing_page_url":"https://doi.org/10.1117/12.2086370","pdf_url":"https://www.spiedigitallibrary.org/conference-proceedings-of-spie/9413/941307/OMERO-and-Bio-Formats-5--flexible-access-to-large/10.1117/12.2086370.pdf","source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire_cris_publications/6d3fc109-d526-432e-9db6-c4fb78390a1d","is_oa":false,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/6d3fc109-d526-432e-9db6-c4fb78390a1d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Moore, J, Linkert, M, Blackburn, C, Carroll, M, Ferguson, G, Flynn, H, Gillen, K, Leigh, R, Li, S, Lindner, D, Moore, W, Patterson, A, Pindelski, B, Ramalingam, B, Rozbicki, E, Tarkowska, A, Walczysko, P, Allan, C, Burel, J-M & Swedlow, J R 2015, OMERO and Bio-Formats 5 : flexible access to large bioimaging datasets at scale. in S Ourselin & M A Styner (eds), Medical Imaging 2015 : Image Processing., 941307, Proceedings of SPIE, vol. 9413, SPIE-International Society for Optical Engineering, Bellingham, SPIE Medical Imaging 2015: Image Processing, Orlando, United States, 24/02/15. https://doi.org/10.1117/12.2086370","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:discovery.dundee.ac.uk:publications/6d3fc109-d526-432e-9db6-c4fb78390a1d","is_oa":false,"landing_page_url":"http://spie.org/MI/conferencedetails/medical-image-processing","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1117/12.2086370","is_oa":true,"landing_page_url":"https://doi.org/10.1117/12.2086370","pdf_url":"https://www.spiedigitallibrary.org/conference-proceedings-of-spie/9413/941307/OMERO-and-Bio-Formats-5--flexible-access-to-large/10.1117/12.2086370.pdf","source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G5541645948","display_name":"Expanded Metadata Support in the Open Microscopy Environment's Bio-Formats & OMERO Data Applications","funder_award_id":"BB/L024233/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2065139696.pdf","grobid_xml":"https://content.openalex.org/works/W2065139696.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W633766847","https://openalex.org/W1974694769","https://openalex.org/W1993456074","https://openalex.org/W1997864537","https://openalex.org/W2005393216","https://openalex.org/W2031312855","https://openalex.org/W2031502025","https://openalex.org/W2050721997","https://openalex.org/W2073476191","https://openalex.org/W2129289695","https://openalex.org/W2418535858","https://openalex.org/W4249037079"],"related_works":["https://openalex.org/W4200140030","https://openalex.org/W101028938","https://openalex.org/W2494633331","https://openalex.org/W1535508119","https://openalex.org/W2101734109","https://openalex.org/W4239412715","https://openalex.org/W2516423950","https://openalex.org/W161199014","https://openalex.org/W2128689476","https://openalex.org/W2383807817"],"abstract_inverted_index":{"The":[0],"Open":[1],"Microscopy":[2],"Environment":[3],"(OME)":[4],"has":[5],"built":[6],"and":[7,17,37,60,110,121,129,146,159],"released":[8],"Bio-Formats,":[9],"a":[10,79,87,90,112],"Java-based":[11],"proprietary":[12,71],"file":[13,88],"format":[14],"conversion":[15,77],"tool":[16],"OMERO,":[18],"an":[19],"enterprise":[20],"data":[21,67,98],"management":[22],"platform":[23],"under":[24],"open":[25],"source":[26],"licenses.":[27],"In":[28],"this":[29],"report,":[30],"we":[31],"describe":[32],"new":[33,125],"versions":[34],"of":[35,58,86,96,100,127],"Bio-Formats":[36,105,130],"OMERO":[38,103,128],"that":[39,51,92,116,150,155],"are":[40,52],"specifically":[41],"designed":[42],"to":[43,106],"support":[44],"large,":[45],"multi-gigabyte":[46],"or":[47],"terabyte":[48],"scale":[49],"datasets":[50,154],"routinely":[53,152],"collected":[54],"across":[55],"most":[56],"domains":[57],"biological":[59],"biomedical":[61],"research.":[62],"Bio-":[63],"Formats":[64],"reads":[65],"image":[66],"directly":[68],"from":[69],"native":[70],"formats,":[72],"bypassing":[73],"the":[74,84,94],"need":[75],"for":[76,135],"into":[78],"standard":[80],"format.":[81],"It":[82],"implements":[83],"concept":[85],"set,":[89],"container":[91],"defines":[93],"contents":[95],"multi-dimensional":[97],"comprised":[99],"many":[101],"files.":[102],"uses":[104],"read":[107],"files":[108],"natively,":[109],"provides":[111],"flexible":[113],"access":[114,122],"mechanism":[115],"supports":[117],"several":[118],"different":[119],"storage":[120],"strategies.":[123],"These":[124],"capabilities":[126],"make":[131],"them":[132],"especially":[133],"useful":[134],"use":[136],"in":[137],"imaging":[138],"applications":[139],"like":[140],"digital":[141],"pathology,":[142],"high":[143],"content":[144],"screening":[145],"light":[147],"sheet":[148],"microscopy":[149],"create":[151],"large":[153],"must":[156],"be":[157],"managed":[158],"analyzed.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}