{"id":"https://openalex.org/W1993569594","doi":"https://doi.org/10.1117/12.2082229","title":"A fully automatic multi-atlas based segmentation method for prostate MR images","display_name":"A fully automatic multi-atlas based segmentation method for prostate MR images","publication_year":2015,"publication_date":"2015-03-20","ids":{"openalex":"https://openalex.org/W1993569594","doi":"https://doi.org/10.1117/12.2082229","mag":"1993569594","pmid":"https://pubmed.ncbi.nlm.nih.gov/26798187"},"language":"en","primary_location":{"id":"doi:10.1117/12.2082229","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2082229","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4717836","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020301327","display_name":"Zhiqiang Tian","orcid":"https://orcid.org/0000-0002-3669-3748"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiqiang Tian","raw_affiliation_strings":["Department of Radiology and Imaging Sciences, Emory University, Atlanta, GA","Emory Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology and Imaging Sciences, Emory University, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Emory Univ. (United States)","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035002271","display_name":"Lizhi Liu","orcid":"https://orcid.org/0009-0004-9683-038X"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"LiZhi Liu","raw_affiliation_strings":["Department of Radiology and Imaging Sciences, Emory University, Atlanta, GA","Emory Univ. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology and Imaging Sciences, Emory University, Atlanta, GA","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Emory Univ. (United States)","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083707303","display_name":"Baowei Fei","orcid":"https://orcid.org/0000-0002-9123-9484"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baowei Fei","raw_affiliation_strings":["Department of Radiology and Imaging Sciences, Emory University, Atlanta, GA; Department of Biomedical Engineering, Emory University and Georgia Institute of Technology","Emory Univ. (United States)","Georgia Institute of Technology (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiology and Imaging Sciences, Emory University, Atlanta, GA; Department of Biomedical Engineering, Emory University and Georgia Institute of Technology","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Emory Univ. (United States)","institution_ids":["https://openalex.org/I150468666"]},{"raw_affiliation_string":"Georgia Institute of Technology (United States)","institution_ids":["https://openalex.org/I130701444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"9413","issue":null,"first_page":"941340","last_page":"941340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9855999946594238,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7971604466438293},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.769955575466156},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.6248682141304016},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5923479199409485},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5791867971420288},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.540787935256958},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.0849108099937439}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7971604466438293},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.769955575466156},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6248682141304016},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5923479199409485},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5791867971420288},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.540787935256958},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0849108099937439},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2082229","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2082229","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},{"id":"pmid:26798187","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26798187","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4717836","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4717836","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4717836","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4717836","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7682172437","display_name":null,"funder_award_id":"R21 CA176684","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8130889213","display_name":null,"funder_award_id":"P50 CA128301","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8745886456","display_name":null,"funder_award_id":"R01 CA156775","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306352","display_name":"Georgia Cancer Coalition","ror":"https://ror.org/0009gvn90"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1872492457","https://openalex.org/W1874027545","https://openalex.org/W1980913318","https://openalex.org/W2012255096","https://openalex.org/W2052617496","https://openalex.org/W2056282952","https://openalex.org/W2057775191","https://openalex.org/W2059961245","https://openalex.org/W2066839705","https://openalex.org/W2094579016","https://openalex.org/W2096090700","https://openalex.org/W2107030642","https://openalex.org/W2109149988","https://openalex.org/W2129587342","https://openalex.org/W2133744395","https://openalex.org/W2148157540","https://openalex.org/W2148347694","https://openalex.org/W2155687979","https://openalex.org/W2578782924","https://openalex.org/W6639419012","https://openalex.org/W6679990451","https://openalex.org/W6732379946"],"related_works":["https://openalex.org/W2755342338","https://openalex.org/W2058170566","https://openalex.org/W2036807459","https://openalex.org/W2775347418","https://openalex.org/W1969923398","https://openalex.org/W2166024367","https://openalex.org/W2772917594","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2079911747"],"abstract_inverted_index":{"Most":[0],"of":[1,13,31,33,57,105,170,179,226,231],"multi-atlas":[2,84],"segmentation":[3,77,97,238],"methods":[4],"focus":[5],"on":[6,80,164,188],"the":[7,10,14,18,28,34,42,66,88,93,96,101,106,116,127,130,140,154,157,160,165,168,171,177,180,185,210,216],"registration":[8,166],"between":[9,212],"full-size":[11],"volumes":[12,138,192],"data":[15],"set.":[16],"Although":[17],"transformations":[19],"obtained":[20],"from":[21],"these":[22],"registrations":[23],"may":[24,37,60],"be":[25,39],"accurate":[26,40],"for":[27,41],"global":[29],"field":[30],"view":[32,58],"images,":[35],"they":[36],"not":[38],"local":[43],"prostate":[44,76,118,131,172,181,247],"region.":[45],"This":[46],"is":[47,109,132,148],"because":[48],"different":[49,55],"magnetic":[50],"resonance":[51],"(MR)":[52],"images":[53],"have":[54,61],"fields":[56],"and":[59,95,202,215,228],"large":[62],"anatomical":[63],"variability":[64],"around":[65],"prostate.":[67,102],"To":[68],"overcome":[69],"this":[70,125],"limitation,":[71],"we":[72],"proposed":[73,161,186,221],"a":[74,81,112,195,224,229,242],"two-stage":[75],"method":[78,162,187,214,222,239],"based":[79],"fully":[82,236],"automatic":[83],"framework,":[85],"which":[86,174],"includes":[87],"detection":[89,146],"stage":[90,98,108],"<i>i.e.</i>":[91,99],"locating":[92],"prostate,":[94],"extracting":[100],"The":[103,220,235],"purpose":[104],"first":[107],"to":[110,139,150,208],"find":[111],"cuboid":[113,128],"that":[114],"contains":[115],"whole":[117],"as":[119,122],"small":[120],"cubage":[121],"possible.":[123],"In":[124],"paper,":[126],"including":[129],"detected":[133],"by":[134,193],"registering":[135],"atlas":[136],"edge":[137,145],"target":[141],"volume":[142],"while":[143],"an":[144],"algorithm":[147],"applied":[149],"every":[151],"slice":[152],"in":[153,167,245],"volumes.":[155],"At":[156],"second":[158],"stage,":[159],"focuses":[163],"region":[169],"vicinity,":[173],"can":[175,240],"improve":[176],"accuracy":[178],"segmentation.":[182],"We":[183],"evaluated":[184],"12":[189],"patient":[190],"MR":[191],"performing":[194],"leave-one-out":[196],"study.":[197],"Dice":[198],"similarity":[199],"coefficient":[200],"(DSC)":[201],"Hausdorff":[203],"distance":[204],"(HD)":[205],"are":[206],"used":[207],"quantify":[209],"difference":[211],"our":[213],"manual":[217],"ground":[218],"truth.":[219],"yielded":[223],"DSC":[225],"83.4%&plusmn;4.3%,":[227],"HD":[230],"9.3":[232],"mm&plusmn;2.6":[233],"mm.":[234],"automated":[237],"provide":[241],"useful":[243],"tool":[244],"many":[246],"imaging":[248],"applications.":[249]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
