{"id":"https://openalex.org/W2063988522","doi":"https://doi.org/10.1117/12.2081443","title":"Integrating histology and MRI in the first digital brain of common squirrel monkey, Saimiri sciureus","display_name":"Integrating histology and MRI in the first digital brain of common squirrel monkey, Saimiri sciureus","publication_year":2015,"publication_date":"2015-03-17","ids":{"openalex":"https://openalex.org/W2063988522","doi":"https://doi.org/10.1117/12.2081443","mag":"2063988522","pmid":"https://pubmed.ncbi.nlm.nih.gov/25914510"},"language":"en","primary_location":{"id":"doi:10.1117/12.2081443","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2081443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2015: Biomedical Applications in Molecular, Structural, and Functional Imaging","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4405811","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102561049","display_name":"Peizhen Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peizhen Sun","raw_affiliation_strings":["Electrical Engineering, Vanderbilt University, Nashville, TN USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055625757","display_name":"Prasanna Parvathaneni","orcid":"https://orcid.org/0000-0001-8813-2494"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prasanna Parvathaneni","raw_affiliation_strings":["Electrical Engineering, Vanderbilt University, Nashville, TN USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105525797","display_name":"Bennett A. Landman","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210162197","display_name":"Vanderbilt Health","ror":"https://ror.org/05grhsk96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210162197"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bennett A. Landman","raw_affiliation_strings":["Electrical Engineering, Vanderbilt University, Nashville, TN USA ; Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA ; Computer Science, Vanderbilt University, Nashville, TN USA","Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering, Vanderbilt University, Nashville, TN USA ; Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA ; Computer Science, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210162197"]},{"raw_affiliation_string":"Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210162197"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113855648","display_name":"Adam M. Anderson","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210162197","display_name":"Vanderbilt Health","ror":"https://ror.org/05grhsk96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210162197"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam M. Anderson","raw_affiliation_strings":["Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210162197"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056838937","display_name":"Kurt G. Schilling","orcid":"https://orcid.org/0000-0003-3686-7645"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210162197","display_name":"Vanderbilt Health","ror":"https://ror.org/05grhsk96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210162197"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kurt G. Schilling","raw_affiliation_strings":["Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210162197"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113622861","display_name":"Yurui Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210162197","display_name":"Vanderbilt Health","ror":"https://ror.org/05grhsk96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210162197"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yurui Gao","raw_affiliation_strings":["Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210162197"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110870633","display_name":"Vaibhav Janve","orcid":null},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]},{"id":"https://openalex.org/I4210162197","display_name":"Vanderbilt Health","ror":"https://ror.org/05grhsk96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210162197"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vaibhav A. Janve","raw_affiliation_strings":["Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA","Electrical Engineering, Vanderbilt University, Nashville, TN USA ; Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA ; Computer Science, Vanderbilt University, Nashville, TN USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210162197"]},{"raw_affiliation_string":"Electrical Engineering, Vanderbilt University, Nashville, TN USA ; Biomedical Engineering, Vanderbilt University, Nashville, TN USA ; Institute of Image Science, Vanderbilt University, Nashville, TN USA ; Computer Science, Vanderbilt University, Nashville, TN USA","institution_ids":["https://openalex.org/I200719446","https://openalex.org/I4210162197"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5102561049"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":null,"apc_paid":null,"fwci":0.5411,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.70082522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"9417","issue":null,"first_page":"64","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/squirrel-monkey","display_name":"Squirrel monkey","score":0.6701012253761292},{"id":"https://openalex.org/keywords/saimiri-sciureus","display_name":"Saimiri sciureus","score":0.6547501087188721},{"id":"https://openalex.org/keywords/diffusion-mri","display_name":"Diffusion MRI","score":0.5901412963867188},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.5892781019210815},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.5582756996154785},{"id":"https://openalex.org/keywords/brain-atlas","display_name":"Brain atlas","score":0.4773395359516144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4772467613220215},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43115469813346863},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.42145973443984985},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.36660435795783997},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1983039379119873},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16781851649284363},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.11477580666542053}],"concepts":[{"id":"https://openalex.org/C2776030879","wikidata":"https://www.wikidata.org/wiki/Q309200","display_name":"Squirrel monkey","level":2,"score":0.6701012253761292},{"id":"https://openalex.org/C3020811242","wikidata":"https://www.wikidata.org/wiki/Q65091688","display_name":"Saimiri sciureus","level":3,"score":0.6547501087188721},{"id":"https://openalex.org/C149550507","wikidata":"https://www.wikidata.org/wiki/Q899360","display_name":"Diffusion MRI","level":3,"score":0.5901412963867188},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.5892781019210815},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.5582756996154785},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.4773395359516144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4772467613220215},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43115469813346863},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.42145973443984985},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.36660435795783997},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1983039379119873},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16781851649284363},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.11477580666542053}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1117/12.2081443","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2081443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Imaging 2015: Biomedical Applications in Molecular, Structural, and Functional Imaging","raw_type":"proceedings-article"},{"id":"pmid:25914510","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25914510","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings of SPIE--the International Society for Optical Engineering","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4405811","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4405811","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4405811","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4405811","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc SPIE Int Soc Opt Eng","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309151","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1562548864","https://openalex.org/W1580036490","https://openalex.org/W1977653087","https://openalex.org/W2050943211","https://openalex.org/W2079795772","https://openalex.org/W2085680715","https://openalex.org/W2136549483","https://openalex.org/W2137915146","https://openalex.org/W2764753979","https://openalex.org/W4230992332","https://openalex.org/W6644711116","https://openalex.org/W6672012466"],"related_works":["https://openalex.org/W2021941342","https://openalex.org/W2011793707","https://openalex.org/W2017555033","https://openalex.org/W2417146342","https://openalex.org/W2410971558","https://openalex.org/W2414811435","https://openalex.org/W2409580079","https://openalex.org/W2470872152","https://openalex.org/W2465872734","https://openalex.org/W4225337113"],"abstract_inverted_index":{"This":[0,209],"effort":[1],"is":[2,67,186],"a":[3,8,19,171,223],"continuation":[4],"of":[5,7,12,28,35,42,55,64,89,157,163,170,178,214,225,243],"development":[6],"digital":[9],"brain":[10,54],"atlas":[11,50,184,235],"the":[13,40,53,84,145,164,196,202,206,212,234,244],"common":[14,77,165],"squirrel":[15,59,166],"monkey,":[16],"<i>Saimiri":[17],"sciureus</i>,":[18],"New":[20],"World":[21],"monkey":[22,167],"with":[23,44,95],"functional":[24],"and":[25,110,129,159,168,227,247],"microstructural":[26],"organization":[27],"central":[29,62],"nervous":[30],"system":[31,81,240,254],"similar":[32],"to":[33,68,73,191,195,205,232,251],"that":[34,174],"humans.":[36],"Here,":[37],"we":[38],"present":[39],"integration":[41],"histology":[43,90,158],"multi-modal":[45],"magnetic":[46],"resonance":[47],"imaging":[48,106,115,128,134],"(MRI)":[49],"constructed":[51],"from":[52],"an":[56,75,252],"adult":[57],"female":[58],"monkey.":[60],"The":[61,181],"concept":[63,226],"this":[65,228],"work":[66,246],"use":[69],"block":[70,220],"face":[71,221],"photography":[72],"establish":[74],"intermediate":[76],"space":[78,236],"in":[79,219,237],"coordinate":[80,239],"which":[82],"preserves":[83],"high":[85,102,124,130],"resolution":[86,88,103,112,125,131],"in-plane":[87],"while":[91],"enabling":[92],"3-D":[93],"correspondence":[94],"MRI.":[96],"<i>In":[97],"vivo</i>":[98,120],"MRI":[99,121,160,185,207],"acquisitions":[100,122],"include":[101,123],"T2":[104,126],"structural":[105,127],"(300":[107],"\u00b5m":[108,137],"isotropic)":[109],"low":[111],"diffusion":[113,132],"tensor":[114,133],"(600":[116],"um":[117],"isotropic).":[118,138],"<i>Ex":[119],"(both":[135],"300":[136],"Cortical":[139],"regions":[140],"were":[141],"manually":[142],"annotated":[143],"on":[144,149],"co-registered":[146],"volumes":[147],"based":[148,161],"published":[150],"histological":[151,203],"sections":[152],"in-plane.":[153],"We":[154],"describe":[155],"mapping":[156,213],"data":[162],"construction":[169],"viewing":[172,177],"tool":[173],"enable":[175],"online":[176],"these":[179],"datasets.":[180],"previously":[182],"descried":[183],"used":[187],"for":[188,255],"its":[189],"deformation":[190],"provide":[192],"accurate":[193],"conformation":[194],"MRI,":[197],"thus":[198],"adding":[199],"information":[200],"at":[201],"level":[204],"volume.":[208],"paper":[210],"presents":[211],"single":[215],"2D":[216],"image":[217],"slice":[218],"as":[222,241],"proof":[224],"can":[229,248],"be":[230,249],"extended":[231],"map":[233],"3D":[238],"part":[242],"future":[245],"loaded":[250],"XNAT":[253],"further":[256],"use.":[257]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}