{"id":"https://openalex.org/W2002694366","doi":"https://doi.org/10.1117/12.2081415","title":"Rank-sparsity constrained atlas construction and phenotyping","display_name":"Rank-sparsity constrained atlas construction and phenotyping","publication_year":2015,"publication_date":"2015-03-20","ids":{"openalex":"https://openalex.org/W2002694366","doi":"https://doi.org/10.1117/12.2081415","mag":"2002694366"},"language":"en","primary_location":{"id":"doi:10.1117/12.2081415","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2081415","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040831737","display_name":"Darin P. Clark","orcid":"https://orcid.org/0000-0002-8496-4565"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. P. Clark","raw_affiliation_strings":["Duke Univ. Medical Ctr. (United States)","Duke Univ, Medical Ctr. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Duke Univ. Medical Ctr. (United States)","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Duke Univ, Medical Ctr. (United States)","institution_ids":["https://openalex.org/I4210126298"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012481366","display_name":"Cristian T. Badea","orcid":"https://orcid.org/0000-0002-1850-2522"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. T. Badea","raw_affiliation_strings":["Duke Univ. Medical Ctr. (United States)","Duke Univ, Medical Ctr. (United States)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Duke Univ. Medical Ctr. (United States)","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Duke Univ, Medical Ctr. (United States)","institution_ids":["https://openalex.org/I4210126298"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04961682,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"9413","issue":null,"first_page":"94130G","last_page":"94130G"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10500","display_name":"Sparse and Compressive Sensing Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10500","display_name":"Sparse and Compressive Sensing Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10531","display_name":"Advanced Vision and Imaging","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.70843106508255},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6639849543571472},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5113806128501892},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40504902601242065},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20858842134475708},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.1599651277065277},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.07435262203216553}],"concepts":[{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.70843106508255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6639849543571472},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5113806128501892},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40504902601242065},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20858842134475708},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.1599651277065277},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.07435262203216553},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2081415","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2081415","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1963577335","https://openalex.org/W1993408979","https://openalex.org/W2001801912","https://openalex.org/W2006907540","https://openalex.org/W2034684968","https://openalex.org/W2036743656","https://openalex.org/W2059619396","https://openalex.org/W2077405566","https://openalex.org/W2077963310","https://openalex.org/W2111298039","https://openalex.org/W2136145485","https://openalex.org/W2145962650","https://openalex.org/W2150410007","https://openalex.org/W4233688842","https://openalex.org/W6659036754","https://openalex.org/W6669697848"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2324878645","https://openalex.org/W2803101231","https://openalex.org/W4284509","https://openalex.org/W4393084406","https://openalex.org/W606911313"],"abstract_inverted_index":{"Atlas":[0],"construction":[1,105,131],"is":[2,81,86,94,154],"of":[3,59,77,129,135,146,163,181,190,228],"great":[4],"interest":[5],"in":[6,48,89,118,141,194,218,225],"the":[7,34,73,110,114,127,133,143,147,150,157,164,171,179,184,214],"medical":[8],"imaging":[9],"community":[10],"as":[11,53],"a":[12,22,101,119,226],"tool":[13],"to":[14,33,83,91,167,183,217],"visually":[15,120],"and":[16,56,65,99,113,159,203],"quantitatively":[17],"characterize":[18],"anatomic":[19,79,103],"variability":[20,191],"within":[21,132],"population.":[23],"Because":[24],"such":[25,52],"atlases":[26],"generally":[27],"exhibit":[28],"superior":[29],"data":[30,36,148,165,223],"fidelity":[31],"relative":[32],"individual":[35,169,204],"sets":[37],"from":[38,62,116,156],"which":[39,142],"they":[40,43],"are":[41],"constructed,":[42],"have":[44],"also":[45],"proven":[46],"invaluable":[47],"numerous":[49],"informatics":[50],"applications":[51],"automated":[54],"segmentation":[55],"classification,":[57],"regularization":[58],"individual-specific":[60],"reconstructions":[61],"undersampled":[63],"data,":[64],"for":[66],"characterizing":[67],"physiologically":[68],"relevant":[69],"functional":[70],"metrics.":[71],"Perhaps":[72],"most":[74],"valuable":[75],"role":[76],"an":[78],"atlas":[80,104,130],"not":[82],"define":[84],"what":[85,93],"\u201cnormal,\u201d":[87],"but,":[88],"fact,":[90],"recognize":[92],"\u201cabnormal.\u201d":[95],"Here,":[96],"we":[97,177],"propose":[98],"demonstrate":[100,178],"novel":[102],"strategy":[106],"that":[107],"simultaneously":[108],"recovers":[109],"average":[111,117],"anatomy":[112],"deviation":[115],"meaningful":[121],"way.":[122],"The":[123],"proposed":[124,215],"approach":[125,216],"treats":[126],"problem":[128],"context":[134],"robust":[136],"principal":[137],"component":[138],"analysis":[139],"(RPCA)":[140],"redundant":[144],"portion":[145,162],"(i.e.":[149,170],"low":[151],"rank":[152],"atlas)":[153],"separated":[155],"spatially":[158],"gradient":[160],"sparse":[161,172],"unique":[166],"each":[168],"variation).":[173],"In":[174],"this":[175],"paper,":[176],"application":[180],"RPCA":[182],"Shepp-Logan":[185],"phantom,":[186],"including":[187],"several":[188],"forms":[189],"encountered":[192],"with":[193],"vivo":[195],"data:":[196],"population":[197],"variability,":[198,200,202],"class":[199],"contrast":[201],"variability.":[205],"We":[206],"then":[207],"present":[208],"preliminary":[209],"results":[210],"produced":[211],"by":[212,233],"applying":[213],"vivo,":[219],"murine":[220],"cardiac":[221],"micro-CT":[222],"acquired":[224],"model":[227],"right":[229],"ventricle":[230],"hypertrophy":[231],"induced":[232],"pulmonary":[234],"arteriole":[235],"hypertension.":[236]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
