{"id":"https://openalex.org/W2006785429","doi":"https://doi.org/10.1117/12.2007800","title":"Fast GPU-based segmentation of H&amp;E stained squamous epithelium from multi-gigapixel tiled virtual slides","display_name":"Fast GPU-based segmentation of H&amp;E stained squamous epithelium from multi-gigapixel tiled virtual slides","publication_year":2013,"publication_date":"2013-03-29","ids":{"openalex":"https://openalex.org/W2006785429","doi":"https://doi.org/10.1117/12.2007800","mag":"2006785429"},"language":"en","primary_location":{"id":"doi:10.1117/12.2007800","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2007800","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111634807","display_name":"Benjamin Bryant","orcid":"https://orcid.org/0000-0003-1574-9543"},"institutions":[{"id":"https://openalex.org/I12315562","display_name":"Texas Tech University","ror":"https://ror.org/0405mnx93","country_code":"US","type":"education","lineage":["https://openalex.org/I12315562"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin Bryant","raw_affiliation_strings":["Texas Tech Univ. (United States)","Texas Tech Univ, UNITED STATES"],"affiliations":[{"raw_affiliation_string":"Texas Tech Univ. (United States)","institution_ids":[]},{"raw_affiliation_string":"Texas Tech Univ, UNITED STATES","institution_ids":["https://openalex.org/I12315562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000603365","display_name":"Hamed Sari\u2010Sarraf","orcid":"https://orcid.org/0000-0003-4274-3614"},"institutions":[{"id":"https://openalex.org/I12315562","display_name":"Texas Tech University","ror":"https://ror.org/0405mnx93","country_code":"US","type":"education","lineage":["https://openalex.org/I12315562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hamed Sari-Sarraf","raw_affiliation_strings":["Texas Tech Univ. (United States)","Texas Tech Univ, UNITED STATES"],"affiliations":[{"raw_affiliation_string":"Texas Tech Univ. (United States)","institution_ids":[]},{"raw_affiliation_string":"Texas Tech Univ, UNITED STATES","institution_ids":["https://openalex.org/I12315562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064192805","display_name":"Mitchell S. Wachtel","orcid":"https://orcid.org/0000-0003-0589-6507"},"institutions":[{"id":"https://openalex.org/I12315562","display_name":"Texas Tech University","ror":"https://ror.org/0405mnx93","country_code":"US","type":"education","lineage":["https://openalex.org/I12315562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitchell Wachtel","raw_affiliation_strings":["Texas Tech Univ. (United States)","Texas Tech Univ, UNITED STATES"],"affiliations":[{"raw_affiliation_string":"Texas Tech Univ. (United States)","institution_ids":[]},{"raw_affiliation_string":"Texas Tech Univ, UNITED STATES","institution_ids":["https://openalex.org/I12315562"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073305817","display_name":"L. Rodney Long","orcid":"https://orcid.org/0000-0002-6218-7806"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rodney Long","raw_affiliation_strings":["National Library of Medicine (United States)","National Library of Medicine, United States"],"affiliations":[{"raw_affiliation_string":"National Library of Medicine (United States)","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, United States","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073995883","display_name":"Sameer Antani","orcid":"https://orcid.org/0000-0002-0040-1387"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sameer Antani","raw_affiliation_strings":["National Library of Medicine (United States)","National Library of Medicine, United States"],"affiliations":[{"raw_affiliation_string":"National Library of Medicine (United States)","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, United States","institution_ids":["https://openalex.org/I2800548410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5111634807"],"corresponding_institution_ids":["https://openalex.org/I12315562"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.07031158,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"8676","issue":null,"first_page":"86760X","last_page":"86760X"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8929803967475891},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5051942467689514},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5001897811889648},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4631369113922119},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.44910311698913574},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.35793063044548035}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8929803967475891},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5051942467689514},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5001897811889648},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4631369113922119},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.44910311698913574},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.35793063044548035}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2007800","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2007800","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314788","display_name":"Lister Hill National Center for Biomedical Communications","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2755342338","https://openalex.org/W2058170566","https://openalex.org/W2036807459","https://openalex.org/W2775347418","https://openalex.org/W1969923398","https://openalex.org/W2772917594","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2079911747"],"abstract_inverted_index":{"The":[0,132],"processing":[1],"of":[2,55,81],"multi-gigapixel":[3],"virtual":[4,57],"histology":[5],"slides":[6],"presents":[7],"a":[8,71,96,101,124,139,145],"computationally":[9],"intensive":[10],"and":[11,112],"time":[12,136],"consuming":[13],"task.":[14],"Common":[15],"tiled":[16],"TIFF":[17],"slide":[18],"formats,":[19],"such":[20],"as":[21],"those":[22],"used":[23,34,47,122],"by":[24],"Aperio":[25],"[1],":[26],"contain":[27],"inherent":[28],"header":[29],"information":[30,76],"that":[31,73],"can":[32],"be":[33],"to":[35,77,87,127],"rapidly":[36,78,109],"locate":[37,88],"tissue":[38],"regions":[39,80,92],"for":[40],"cervical":[41],"intraepithelial":[42],"neoplasia":[43],"(CIN)":[44],"diagnosis.":[45],"Tiles":[46],"in":[48,83,123],"these":[49],"formats":[50],"are":[51,93,121],"individually":[52],"compressed":[53],"subsections":[54],"the":[56,157],"slide,":[58],"whose":[59],"compression":[60],"ratio":[61],"varies":[62],"based":[63],"on":[64],"their":[65],"individual":[66],"content.":[67],"This":[68],"paper":[69],"discusses":[70],"method":[72],"exploits":[74],"this":[75],"identify":[79],"interest":[82],"an":[84,160],"iterative":[85],"process":[86],"epithelial":[89],"tissue.":[90],"These":[91],"decompressed":[94],"using":[95,138],"multi-core":[97],"CPU,":[98],"from":[99],"which":[100],"Compute":[102],"Unified":[103],"Device":[104],"Architecture":[105],"(CUDA)":[106],"enabled":[107],"GPU":[108],"generates":[110],"features":[111],"Support":[113],"Vector":[114],"Machine":[115],"(SVM)":[116],"decisions.":[117],"SVM":[118],"classifier":[119],"results":[120],"post-processing":[125],"scheme":[126],"remove":[128],"apparently":[129],"spurious":[130],"misclassifications.":[131],"mean":[133],"overall":[134],"execution":[135],"when":[137,165],"high-end":[140],"desktop":[141],"PC,":[142],"together":[143],"with":[144],"GTX":[146],"560":[147],"GPU,":[148],"is":[149],"roughly":[150],"3":[151],"seconds":[152],"per":[153],"gigapixel,":[154],"while":[155],"maintaining":[156],"area":[158],"under":[159],"ROC":[161],"curve":[162],"above":[163],"0.9":[164],"classifying":[166],"squamous":[167],"epithelium":[168],"versus":[169],"other":[170],"tissues.":[171]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
