{"id":"https://openalex.org/W2032248076","doi":"https://doi.org/10.1117/12.2005937","title":"Annotating image ROIs with text descriptions for multimodal biomedical document retrieval","display_name":"Annotating image ROIs with text descriptions for multimodal biomedical document retrieval","publication_year":2013,"publication_date":"2013-02-04","ids":{"openalex":"https://openalex.org/W2032248076","doi":"https://doi.org/10.1117/12.2005937","mag":"2032248076"},"language":"en","primary_location":{"id":"doi:10.1117/12.2005937","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2005937","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065224038","display_name":"Daekeun You","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daekeun You","raw_affiliation_strings":["National Library of Medicine (United States)","National Library of Medicine, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (United States)","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, United States","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078126808","display_name":"Matthew Simpson","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Simpson","raw_affiliation_strings":["National Library of Medicine (United States)","National Library of Medicine, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (United States)","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, United States","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073995883","display_name":"Sameer Antani","orcid":"https://orcid.org/0000-0002-0040-1387"},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sameer Antani","raw_affiliation_strings":["National Library of Medicine (United States)","National Library of Medicine, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (United States)","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, United States","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046764593","display_name":"Dina Demner\u2010Fushman","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dina Demner-Fushman","raw_affiliation_strings":["National Library of Medicine (United States)","National Library of Medicine, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (United States)","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, United States","institution_ids":["https://openalex.org/I2800548410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103701816","display_name":"George R. Thoma","orcid":null},"institutions":[{"id":"https://openalex.org/I2800548410","display_name":"United States National Library of Medicine","ror":"https://ror.org/0060t0j89","country_code":"US","type":"archive","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George R. Thoma","raw_affiliation_strings":["National Library of Medicine (United States)","National Library of Medicine, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Library of Medicine (United States)","institution_ids":["https://openalex.org/I2800548410"]},{"raw_affiliation_string":"National Library of Medicine, United States","institution_ids":["https://openalex.org/I2800548410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I2800548410"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"8658","issue":null,"first_page":"86580D","last_page":"86580D"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8038990497589111},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7151482105255127},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6497127413749695},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6341103911399841},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5786370038986206},{"id":"https://openalex.org/keywords/image-retrieval","display_name":"Image retrieval","score":0.5421742796897888},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.5328812003135681},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5310559272766113},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.5159299969673157},{"id":"https://openalex.org/keywords/dynamic-time-warping","display_name":"Dynamic time warping","score":0.5144481658935547},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5002245903015137},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4223119914531708},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3927564024925232},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10797250270843506}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8038990497589111},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7151482105255127},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6497127413749695},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6341103911399841},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5786370038986206},{"id":"https://openalex.org/C1667742","wikidata":"https://www.wikidata.org/wiki/Q10927554","display_name":"Image retrieval","level":3,"score":0.5421742796897888},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.5328812003135681},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5310559272766113},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.5159299969673157},{"id":"https://openalex.org/C88516994","wikidata":"https://www.wikidata.org/wiki/Q1268863","display_name":"Dynamic time warping","level":2,"score":0.5144481658935547},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5002245903015137},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4223119914531708},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3927564024925232},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10797250270843506},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1117/12.2005937","is_oa":false,"landing_page_url":"https://doi.org/10.1117/12.2005937","pdf_url":null,"source":{"id":"https://openalex.org/S183492911","display_name":"Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE","issn_l":"0277-786X","issn":["0277-786X","1996-756X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310315543","host_organization_name":"SPIE","host_organization_lineage":["https://openalex.org/P4310315543"],"host_organization_lineage_names":["SPIE"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SPIE Proceedings","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320314788","display_name":"Lister Hill National Center for Biomedical Communications","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2133184712","https://openalex.org/W2047973478","https://openalex.org/W1572370569","https://openalex.org/W3119811191","https://openalex.org/W2032182853","https://openalex.org/W2004030635","https://openalex.org/W4381744813","https://openalex.org/W4238243837","https://openalex.org/W2997522288","https://openalex.org/W4205150741"],"abstract_inverted_index":{"Regions":[0],"of":[1,69,118,154,188],"interest":[2],"(ROIs)":[3],"that":[4,40,101,125,131],"are":[5,17,132],"pointed":[6],"to":[7,19,55,81,110],"by":[8,46],"overlaid":[9],"markers":[10,48],"(arrows,":[11],"asterisks,":[12],"etc.)":[13],"in":[14],"biomedical":[15,30,119],"images":[16,135],"expected":[18],"contain":[20],"more":[21],"important":[22],"and":[23,33,42,78,116,128,136,186,190],"relevant":[24],"information":[25],"than":[26],"other":[27],"regions":[28],"for":[29,87,97,114,176],"article":[31],"indexing":[32,115],"retrieval.":[34],"We":[35,121],"have":[36],"developed":[37],"several":[38],"algorithms":[39],"localize":[41],"extract":[43],"the":[44,70,172],"ROIs":[45,52,71,86,91,103,130],"recognizing":[47],"on":[49,143],"images.":[50],"Cropped":[51],"then":[53,93],"need":[54,80],"be":[56,73,82,94],"annotated":[57,90],"with":[58,84,158],"contents":[59],"describing":[60],"them":[61],"best.":[62],"In":[63],"most":[64],"cases":[65],"accurate":[66],"textual":[67,129,178,196],"descriptions":[68],"can":[72,92],"found":[74],"from":[75,134],"figure":[76,137],"captions,":[77,138],"these":[79],"combined":[83],"image":[85],"annotation.":[88],"The":[89],"used":[95],"to,":[96],"example,":[98],"train":[99],"classifiers":[100],"separate":[102],"into":[104,151],"known":[105],"categories":[106],"(medical":[107],"concepts),":[108],"or":[109],"build":[111],"visual":[112,127,160],"ontologies,":[113],"retrieval":[117],"articles.":[120],"propose":[122],"an":[123],"algorithm":[124,141,170],"pairs":[126],"extracted":[133],"respectively.":[139],"This":[140],"based":[142],"dynamic":[144],"time":[145],"warping":[146],"(DTW)":[147],"clusters":[148],"recognized":[149],"pointers":[150,157],"groups,":[152],"each":[153,177],"which":[155],"contains":[156],"identical":[159],"properties":[161],"(shape,":[162],"size,":[163],"color,":[164],"etc.).":[165],"Then":[166],"a":[167,184],"rule-based":[168],"matching":[169,174],"finds":[171],"best":[173],"group":[175],"ROI":[179,197],"mention.":[180],"Our":[181],"method":[182],"yields":[183],"precision":[185],"recall":[187],"96%":[189],"79%,":[191],"respectively,":[192],"when":[193],"ground":[194],"truth":[195],"data":[198],"is":[199],"used.":[200]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
