{"id":"https://openalex.org/W7164123067","doi":"https://doi.org/10.1111/cgf.70457","title":"GEVIS: A Workflow\u2010Driven Visual Analytics Approach to Differential Gene Expression Analysis","display_name":"GEVIS: A Workflow\u2010Driven Visual Analytics Approach to Differential Gene Expression Analysis","publication_year":2026,"publication_date":"2026-06-10","ids":{"openalex":"https://openalex.org/W7164123067","doi":"https://doi.org/10.1111/cgf.70457"},"language":"en","primary_location":{"id":"doi:10.1111/cgf.70457","is_oa":true,"landing_page_url":"https://doi.org/10.1111/cgf.70457","pdf_url":null,"source":{"id":"https://openalex.org/S67831204","display_name":"Computer Graphics Forum","issn_l":"0167-7055","issn":["0167-7055","1467-8659"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Graphics Forum","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1111/cgf.70457","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055376474","display_name":"Graziano Blasilli","orcid":"https://orcid.org/0000-0003-3339-6403"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"G. Blasilli","raw_affiliation_strings":["Sapienza University of Rome  Italy"],"raw_orcid":"https://orcid.org/0000-0003-3339-6403","affiliations":[{"raw_affiliation_string":"Sapienza University of Rome  Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138370459","display_name":"F. Fortunato","orcid":"https://orcid.org/0009-0003-1782-8584"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"F. Fortunato","raw_affiliation_strings":["Sapienza University of Rome  Italy"],"raw_orcid":"https://orcid.org/0009-0003-1782-8584","affiliations":[{"raw_affiliation_string":"Sapienza University of Rome  Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138352540","display_name":"C. Santaroni","orcid":"https://orcid.org/0009-0000-1997-4938"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"C. Santaroni","raw_affiliation_strings":["Sapienza University of Rome  Italy"],"raw_orcid":"https://orcid.org/0009-0000-1997-4938","affiliations":[{"raw_affiliation_string":"Sapienza University of Rome  Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054544519","display_name":"Giulia Fiscon","orcid":"https://orcid.org/0000-0002-3354-8203"},"institutions":[{"id":"https://openalex.org/I292310028","display_name":"San Raffaele University of Rome","ror":"https://ror.org/02rwycx38","country_code":"IT","type":"education","lineage":["https://openalex.org/I292310028"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"G. Fiscon","raw_affiliation_strings":["San Raffaele University of Rome  Italy"],"raw_orcid":"https://orcid.org/0000-0002-3354-8203","affiliations":[{"raw_affiliation_string":"San Raffaele University of Rome  Italy","institution_ids":["https://openalex.org/I292310028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077525727","display_name":"Giuseppe Santucci","orcid":"https://orcid.org/0000-0003-4350-1123"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"G. Santucci","raw_affiliation_strings":["Sapienza University of Rome  Italy"],"raw_orcid":"https://orcid.org/0000-0003-4350-1123","affiliations":[{"raw_affiliation_string":"Sapienza University of Rome  Italy","institution_ids":["https://openalex.org/I861853513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3710,"currency":"USD","value_usd":3710},"apc_paid":{"value":3710,"currency":"USD","value_usd":3710},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.57037468,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.5382000207901001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.5382000207901001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.08309999853372574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0828000009059906,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7310000061988831},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.7224000096321106},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5418999791145325},{"id":"https://openalex.org/keywords/interactive-visual-analysis","display_name":"Interactive visual analysis","score":0.5202999711036682},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5156999826431274},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5101000070571899},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.45680001378059387},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.45239999890327454}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7853999733924866},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7310000061988831},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.7224000096321106},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5418999791145325},{"id":"https://openalex.org/C99740376","wikidata":"https://www.wikidata.org/wiki/Q17092520","display_name":"Interactive visual analysis","level":4,"score":0.5202999711036682},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5156999826431274},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5101000070571899},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.45680001378059387},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.45239999890327454},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4433000087738037},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4302000105381012},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40470001101493835},{"id":"https://openalex.org/C175801342","wikidata":"https://www.wikidata.org/wiki/Q1988917","display_name":"Data analysis","level":2,"score":0.4025999903678894},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.38429999351501465},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3831999897956848},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37709999084472656},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.3723999857902527},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3255000114440918},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3230000138282776},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31700000166893005},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.30809998512268066},{"id":"https://openalex.org/C23130292","wikidata":"https://www.wikidata.org/wiki/Q5275358","display_name":"Differential privacy","level":2,"score":0.3019999861717224},{"id":"https://openalex.org/C124670913","wikidata":"https://www.wikidata.org/wiki/Q2608526","display_name":"Process mining","level":5,"score":0.28780001401901245},{"id":"https://openalex.org/C2777055276","wikidata":"https://www.wikidata.org/wiki/Q7936580","display_name":"Visual approach","level":2,"score":0.27900001406669617},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.27559998631477356},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.266400009393692}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1111/cgf.70457","is_oa":true,"landing_page_url":"https://doi.org/10.1111/cgf.70457","pdf_url":null,"source":{"id":"https://openalex.org/S67831204","display_name":"Computer Graphics Forum","issn_l":"0167-7055","issn":["0167-7055","1467-8659"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Graphics Forum","raw_type":"journal-article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1771939","is_oa":false,"landing_page_url":"https://hdl.handle.net/11573/1771939","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1111/cgf.70457","is_oa":true,"landing_page_url":"https://doi.org/10.1111/cgf.70457","pdf_url":null,"source":{"id":"https://openalex.org/S67831204","display_name":"Computer Graphics Forum","issn_l":"0167-7055","issn":["0167-7055","1467-8659"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Graphics Forum","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7949444651603699,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1981509058","https://openalex.org/W1982451263","https://openalex.org/W1986849266","https://openalex.org/W2020541351","https://openalex.org/W2062567955","https://openalex.org/W2070050178","https://openalex.org/W2070494252","https://openalex.org/W2087384871","https://openalex.org/W2090687959","https://openalex.org/W2107665951","https://openalex.org/W2120865735","https://openalex.org/W2148974484","https://openalex.org/W2154431984","https://openalex.org/W2156631105","https://openalex.org/W2161106528","https://openalex.org/W2179438025","https://openalex.org/W2522746704","https://openalex.org/W2766313885","https://openalex.org/W2780155440","https://openalex.org/W2810954907","https://openalex.org/W2901757853","https://openalex.org/W2924865280","https://openalex.org/W2944634251","https://openalex.org/W2945044133","https://openalex.org/W2951159620","https://openalex.org/W2964312306","https://openalex.org/W2966870798","https://openalex.org/W2984996233","https://openalex.org/W3021476549","https://openalex.org/W3027888781","https://openalex.org/W3040926392","https://openalex.org/W3090939566","https://openalex.org/W3112422887","https://openalex.org/W3126716745","https://openalex.org/W3162350134","https://openalex.org/W3164692211","https://openalex.org/W3194167281","https://openalex.org/W3199843417","https://openalex.org/W3217753204","https://openalex.org/W4285112605","https://openalex.org/W4288762502","https://openalex.org/W4297260460","https://openalex.org/W4319311001","https://openalex.org/W4319986284","https://openalex.org/W4377983012","https://openalex.org/W4378212544","https://openalex.org/W4392352213","https://openalex.org/W4396894255","https://openalex.org/W4402926830","https://openalex.org/W6888927791"],"related_works":[],"abstract_inverted_index":{"Abstract":[0],"Differential":[1],"gene":[2,105],"expression":[3,106],"(DGE)":[4],"analysis":[5,43,95,130],"is":[6],"one":[7],"of":[8,37,104],"the":[9,35,140,149,152],"most":[10],"widely":[11],"used":[12],"techniques":[13],"for":[14,28,63,79,93],"investigating":[15],"RNA\u2010seq":[16],"data":[17,107],"and":[18,22,30,51,68,76,100,138,151,162],"supports":[19,101],"numerous":[20],"medical":[21,38],"biological":[23],"applications,":[24],"including":[25,66],"biomarker":[26],"identification":[27],"diagnosis":[29],"prognosis,":[31],"as":[32,34,57],"well":[33],"evaluation":[36],"treatments.":[39],"However,":[40],"performing":[41],"DGE":[42,94,129],"typically":[44],"requires":[45],"navigating":[46],"a":[47,61,88,109,120,145,165],"complex":[48],"multistep":[49],"pipeline":[50],"proficiency":[52],"in":[53,160],"programming":[54],"languages":[55],"such":[56],"R.":[58],"This":[59],"poses":[60],"barrier":[62],"researchers":[64],"\u2010\u2010\u2010":[65,70],"biologists":[67],"clinicians":[69],"who":[71],"may":[72],"lack":[73],"coding":[74],"expertise,":[75],"adds":[77],"overhead":[78,137],"experienced":[80],"bioinformaticians.":[81],"To":[82],"address":[83],"these":[84],"challenges,":[85],"we":[86,117],"propose":[87],"workflow\u2010driven":[89],"visual":[90,121],"analytics":[91,122],"approach":[92],"that":[96,124],"integrates":[97],"state\u2010of\u2010the\u2010art":[98],"methodologies":[99],"interactive":[102],"exploration":[103],"through":[108,164],"guided":[110],"step\u2010by\u2010step":[111],"process.":[112],"Building":[113],"on":[114],"this":[115],"workflow,":[116],"developed":[118],"GEVIS,":[119],"system":[123,154],"enables":[125],"users":[126],"to":[127,144],"conduct":[128],"without":[131],"writing":[132],"code,":[133],"thereby":[134],"reducing":[135],"analytical":[136],"making":[139],"process":[141],"more":[142],"accessible":[143],"broader":[146],"audience.":[147],"Both":[148],"workflow":[150],"GEVIS":[153],"have":[155],"been":[156],"validated":[157],"by":[158],"experts":[159],"bioinformatics":[161],"demonstrated":[163],"use":[166],"case.":[167]},"counts_by_year":[],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2026-06-11T00:00:00"}
