{"id":"https://openalex.org/W1481617323","doi":"https://doi.org/10.1109/visual.2003.1250423","title":"Interactive protein manipulation","display_name":"Interactive protein manipulation","publication_year":2004,"publication_date":"2004-03-02","ids":{"openalex":"https://openalex.org/W1481617323","doi":"https://doi.org/10.1109/visual.2003.1250423","mag":"1481617323"},"language":"en","primary_location":{"id":"doi:10.1109/visual.2003.1250423","is_oa":false,"landing_page_url":"https://doi.org/10.1109/visual.2003.1250423","pdf_url":null,"source":{"id":"https://openalex.org/S120877133","display_name":"IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control","issn_l":"0885-3010","issn":["0885-3010","1525-8955","2373-7840"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://escholarship.org/content/qt1pz573nj/qt1pz573nj.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026838436","display_name":"Oliver Kreylos","orcid":"https://orcid.org/0000-0003-0017-525X"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"O. Kreylos","raw_affiliation_strings":["Center for Image Processing and Integrated Computing, Department of Computer Science, University of California, Davis, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Image Processing and Integrated Computing, Department of Computer Science, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019023365","display_name":"Nelson Max","orcid":"https://orcid.org/0000-0003-0346-839X"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N.L. Max","raw_affiliation_strings":["Center for Image Processing and Integrated Computing, Department of Computer Science, University of California, Davis, CA, USA","Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Image Processing and Integrated Computing, Department of Computer Science, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077191719","display_name":"Bernd Hamann","orcid":"https://orcid.org/0000-0002-3579-5005"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Hamann","raw_affiliation_strings":["Center for Image Processing and Integrated Computing, Department of Computer Science, University of California, Davis, CA, USA","Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Image Processing and Integrated Computing, Department of Computer Science, University of California, Davis, CA, USA","institution_ids":["https://openalex.org/I84218800"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009354743","display_name":"Silvia Crivelli","orcid":"https://orcid.org/0000-0003-1919-1890"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S.N. Crivelli","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055279742","display_name":"E. Wes Bethel","orcid":"https://orcid.org/0000-0003-0790-7716"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Wes Bethel","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026838436"],"corresponding_institution_ids":["https://openalex.org/I84218800"],"apc_list":null,"apc_paid":null,"fwci":0.2395,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.52070183,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"581","last_page":"588"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9578999876976013,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7616782188415527},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7486379146575928},{"id":"https://openalex.org/keywords/scratch","display_name":"Scratch","score":0.5526524186134338},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5423673987388611},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.527877926826477},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5040420889854431},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.500835657119751},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.44629180431365967},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28093165159225464},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24625587463378906},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10513773560523987}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7616782188415527},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7486379146575928},{"id":"https://openalex.org/C2781235140","wikidata":"https://www.wikidata.org/wiki/Q275131","display_name":"Scratch","level":2,"score":0.5526524186134338},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5423673987388611},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.527877926826477},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5040420889854431},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.500835657119751},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.44629180431365967},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28093165159225464},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24625587463378906},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10513773560523987},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1109/visual.2003.1250423","is_oa":false,"landing_page_url":"https://doi.org/10.1109/visual.2003.1250423","pdf_url":null,"source":{"id":"https://openalex.org/S120877133","display_name":"IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control","issn_l":"0885-3010","issn":["0885-3010","1525-8955","2373-7840"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control","raw_type":"proceedings-article"},{"id":"pmh:qt1pz573nj","is_oa":true,"landing_page_url":"http://www.escholarship.org/uc/item/1pz573nj","pdf_url":"https://escholarship.org/content/qt1pz573nj/qt1pz573nj.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kreylos, Oliver; Max, Nelson L.; Hamann, Bernd; Crivelli, Silvia N.; &amp; Bethel, E. Wes. (2003). Interactive protein manipulation. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/1pz573nj","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1pz573nj","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1pz573nj","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt2x71b2tq","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/2x71b2tq","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt9347t2rx","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/9347t2rx","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:qt2x71b2tq","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/2x71b2tq","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kreylos, Oliver; Max, Nelson; Crivelli, Silvia Noemi; Bethel, Wes; &amp; Hamann, Bernd. (2003). Interactive Protein Manipulation. UC Davis: Institute for Data Analysis and Visualization. Retrieved from: http://www.escholarship.org/uc/item/2x71b2tq","raw_type":"article"},{"id":"pmh:qt9347t2rx","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/9347t2rx","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kreylos, Oliver; Hamann, Bernd; Max, Nelson; Bethel, Wes; &amp; Crivelli, Silvia Noemi. (2002). Interactive Protein Manipulation. UC Davis: Institute for Data Analysis and Visualization. Retrieved from: http://www.escholarship.org/uc/item/9347t2rx","raw_type":"article"}],"best_oa_location":{"id":"pmh:qt1pz573nj","is_oa":true,"landing_page_url":"http://www.escholarship.org/uc/item/1pz573nj","pdf_url":"https://escholarship.org/content/qt1pz573nj/qt1pz573nj.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kreylos, Oliver; Max, Nelson L.; Hamann, Bernd; Crivelli, Silvia N.; &amp; Bethel, E. Wes. (2003). Interactive protein manipulation. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/1pz573nj","raw_type":"article"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.7599999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1481617323.pdf","grobid_xml":"https://content.openalex.org/works/W1481617323.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1570770065","https://openalex.org/W2029667189","https://openalex.org/W2033528502","https://openalex.org/W2051434435","https://openalex.org/W2060651377","https://openalex.org/W2122199548","https://openalex.org/W2142529984","https://openalex.org/W2156871002"],"related_works":["https://openalex.org/W2105848047","https://openalex.org/W1484728888","https://openalex.org/W1994167454","https://openalex.org/W2747638557","https://openalex.org/W2121466396","https://openalex.org/W2148441784","https://openalex.org/W1543174845","https://openalex.org/W2798130635","https://openalex.org/W2293279344","https://openalex.org/W2911538778","https://openalex.org/W2409598161","https://openalex.org/W2111412381","https://openalex.org/W3008923112","https://openalex.org/W2103304056","https://openalex.org/W2920919814","https://openalex.org/W1987474460","https://openalex.org/W2113127595","https://openalex.org/W2174842271","https://openalex.org/W2989584480","https://openalex.org/W2790990107"],"abstract_inverted_index":{"We":[0],"describe":[1],"an":[2,22],"interactive":[3,97],"visualization":[4,92,104],"and":[5,32,103],"modeling":[6],"program":[7,20,52,89],"for":[8,40,74,94],"the":[9,57,66],"creation":[10],"of":[11,35,60,84],"protein":[12,62,85,95],"structures":[13,67],"\"from":[14],"scratch.\"":[15],"The":[16],"input":[17,73],"to":[18,106],"our":[19],"is":[21],"amino":[23,42],"acid":[24,43],"sequence":[25,34],"-":[26,31,44],"decoded":[27],"from":[28],"a":[29,33,61,75,108],"gene":[30],"predicted":[36],"secondary":[37],"structure":[38,48,63,86],"types":[39],"each":[41],"provided":[45],"by":[46],"external":[47],"prediction":[49,64],"programs.":[50],"Our":[51,88],"can":[53],"be":[54],"used":[55],"in":[56,110],"set-up":[58],"phase":[59],"process;":[65],"created":[68],"with":[69],"it":[70],"serve":[71],"as":[72],"subsequent":[76],"global":[77],"internal":[78],"energy":[79],"minimization,":[80],"or":[81],"another":[82],"method":[83],"prediction.":[87],"supports":[90],"basic":[91],"methods":[93],"structures,":[96],"manipulation":[98],"based":[99],"on":[100],"inverse":[101],"kinematics,":[102],"guides":[105],"aid":[107],"user":[109],"creating":[111],"\"good\"":[112],"initial":[113],"structures.":[114]},"counts_by_year":[],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
